[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************
ID                 : mmu-mir-19a
DESCRIPTION        : mmu-mir-19a MI0000688 Mus musculus miR-19a stem-loop
CHROMOSOME         : 14
SPAN               : 115443222 - 115443303
LENGTH             : 82
SEQUENCE           : GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-19a
ACCID      : MI0000688
PARENT     : mmu-mir-19a
CHROMOSOME : 14
START      : 115443222
STOP       : 115443303
OFFSET     : 49..71
SEQUENCE   : TGTGCAAATCTATGCAAAACTGA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-19a*
ACCID      : MI0000688
PARENT     : mmu-mir-19a
CHROMOSOME : 14
START      : 115443222
STOP       : 115443303
OFFSET     : 13..34
SEQUENCE   : TAGTTTTGCATAGTTGCACTAC
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________
GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC REF                  14                   115443222 - 115443303 
                                                TGTGCAAATCTATGCAAAACTGA            MATURE               14                   115443271 - 115443374 mmu-miR-19a          +                    
            TAGTTTTGCATAGTTGCACTAC                                                 MATURESTAR           14                   115443235 - 115443337 mmu-miR-19a*         +                    
__________________________________________________________________________________

                                                                              -SEQ-                              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................GTGCAAATCTATGCAAAACTGA............   read_78398_97_147_141_100_129_134       MATURE          748        45.31          385        44.30          363        46.42                        22   
.................................................GTGCAAATCTATGCAAAACTG.............       read_186714_62_65_81_50_57_64       MATURE          379        22.96          208        23.94          171        21.87                        21   
.................................................GTGCAAATCTATGCAAAACTGt............       read_267688_21_36_25_13_28_29       MATURE          152         9.21           82         9.44           70         8.95            t           21   
.................................................GTGCAAATCTATGCAAAACT..............       read_117488_14_15_13_16_17_32       MATURE          107         6.48           42         4.83           65         8.31                        20   
................................................TGTGCAAATCTATGCAAAACTG.............             read_171596_7_6_7_4_1_5       MATURE           30         1.82           20         2.30           10         1.28                        22   
................................................TGTGCAAATCTATGCAAAACTGA............             read_327904_5_6_7_2_5_4       MATURE           29         1.76           18         2.07           11         1.41                        23   
.................................................GTGCAAATCTATGCAAAACTGAT...........             read_145808_7_4_5_5_1_3       MATURE           25         1.51           16         1.84            9         1.15                        23   
................................................TGTGCAAATCTATGCAAAACT..............             read_270409_2_5_0_4_3_5       MATURE           19         1.15            7         0.81           12         1.53                        21   
.................................................GTGCAAATCTATGCAAAA................               read_2841_1_4_4_3_2_3       MATURE           17         1.03            9         1.04            8         1.02                        18   
................................................TGTGCAAATCTATGCAAAACTGt............             read_373879_1_2_5_1_0_0       MATURE            9         0.55            8         0.92            1         0.13            t           22   
.................................................GTGCAAATCTATGaAAAACTGA............             read_109548_1_0_4_1_2_0       MATURE            8         0.48            5         0.58            3         0.38                      13A8   
.....................................................AAATCTATGCAAAACTG.............              read_99839_0_0_0_0_3_2       MATURE            5         0.30            0         0.00            5         0.64                        17   
.................................................GTGCAAATCTATGCAAAAC...............             read_357513_0_0_0_2_0_3       MATURE            5         0.30            0         0.00            5         0.64                        19   
.................................................GTGCAAATCTATGCAAAACTGAa...........             read_325605_0_0_3_0_1_0       MATURE            4         0.24            3         0.35            1         0.13            a           22   
.................................................GTGCAAATCTATGCAAAgCTG.............             read_283419_0_1_1_1_0_1       MATURE            4         0.24            2         0.23            2         0.26                      17G3   
.................................................GTGCAAATCTATGaAAAACTG.............             read_167038_1_1_0_1_0_1       MATURE            4         0.24            2         0.23            2         0.26                      13A7   
.................................................GTGCAAATCTATGCAAAAtTGA............             read_352642_1_1_1_0_1_0       MATURE            4         0.24            3         0.35            1         0.13                      18T3   
.................................................GTGCAAATCTAcGCAAAACTGA............             read_297439_0_0_2_0_1_1       MATURE            4         0.24            2         0.23            2         0.26                     11C10   
.................................................GTGCAAATCTATGCgAAACTG.............             read_321776_2_0_0_1_0_0       MATURE            3         0.18            2         0.23            1         0.13                      14G6   
.................................................GTGCAAATCaATGCAAAACTG.............              read_79324_1_1_1_0_0_0       MATURE            3         0.18            3         0.35            0         0.00                      9A11   
.................................................GTGCAAATCTATGCAAgACTG.............             read_230813_1_0_0_0_1_1       MATURE            3         0.18            1         0.12            2         0.26                      16G4   
.................................................GTGCAAATCTATGCAAAACTGtt...........             read_343190_1_0_0_1_0_1       MATURE            3         0.18            1         0.12            2         0.26           tt           21   
................................................TGTGCAAATCTATGCAAAAC...............             read_218213_0_0_0_2_1_0       MATURE            3         0.18            0         0.00            3         0.38                        20   
.................................................GTGCAAATCTATGCAAAcCTG.............              read_24716_0_0_0_0_0_3       MATURE            3         0.18            0         0.00            3         0.38                      17C3   
.................................................GTGCAAATCTATGCAAgACTGA............             read_226573_1_0_0_1_0_0       MATURE            2         0.12            1         0.12            1         0.13                      16G5   
................................................TGTGCAAATCTATGCAAAACTGAT...........             read_327182_0_1_0_0_0_1       MATURE            2         0.12            1         0.12            1         0.13                        24   
.................................................GTGCAAAcCTATGCAAAACTGA............             read_213887_0_1_1_0_0_0       MATURE            2         0.12            2         0.23            0         0.00                      7C14   
.................................................cTGCAAATCTATGCAAAACTGA............             read_113337_1_0_1_0_0_0       MATURE            2         0.12            2         0.23            0         0.00                        21   
.................................................GTGCAAATCTATGCAAAACTt.............             read_299654_0_0_0_1_1_0       MATURE            2         0.12            0         0.00            2         0.26            t           20   
.................................................GTGCAAATCTATGCAAAACTGATt..........             read_308036_0_0_1_0_0_1       MATURE            2         0.12            1         0.12            1         0.13            t           23   
.................................................GTGCAAATCTATGCgAAACTGt............              read_90211_2_0_0_0_0_0       MATURE            2         0.12            2         0.23            0         0.00            t         14G6   
.................................................GTGCAAATCTATGCAAA.................             read_244941_0_0_0_0_0_2       MATURE            2         0.12            0         0.00            2         0.26                        17   
.................................................GTGCAAATCTATaCAAAACTG.............             read_354476_0_1_0_0_1_0       MATURE            2         0.12            1         0.12            1         0.13                      12A8   
.....................................................AAATCTATGCAAAACTGA............              read_90851_0_0_1_0_0_1       MATURE            2         0.12            1         0.12            1         0.13                        18   
.................................................GTGCAAATCTATGCAAAAaTGA............             read_251087_2_0_0_0_0_0       MATURE            2         0.12            2         0.23            0         0.00                      18A3   
.................................................GTGCAAATCTATGCAAAACTta............             read_332641_1_0_0_0_0_1       MATURE            2         0.12            1         0.12            1         0.13           ta           20   
.................................................GTGCAAATCTATGCAAAACTGg............              read_71920_0_2_0_0_0_0       MATURE            2         0.12            2         0.23            0         0.00            g           21   
.................................................GTGCAAATCTATGCgAAACTGA............              read_83514_2_0_0_0_0_0       MATURE            2         0.12            2         0.23            0         0.00                      14G7   
.................................................GTGCAAATCTATGCAAAAtTGt............             read_326544_0_0_0_0_0_2       MATURE            2         0.12            0         0.00            2         0.26            t         18T2   
.................................................cTGCAAATCTATGCAAAACTG.............             read_155453_0_0_1_1_0_0       MATURE            2         0.12            1         0.12            1         0.13                        20   
................................................TGTGCAAATCTATGCgAAACTGA............             read_227002_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13                      15G7   
................................................TGTGCAAATCTATGtAAAACTGt............             read_348130_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            t         14T7   
.................................................GTGCAAATCTATGCAgAACTG.............             read_214464_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      15G5   
.................................................GTGCAAATCTATGCAAAACgg.............             read_165828_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00           gg           19   
.................................................cTGCAAATCTATGCAAAACTGt............             read_165430_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            t           20   
.................................................GTGCAAATCTATGCAAAACTa.............             read_279293_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13            a           20   
.................................................GTaCAAATCTATGCAAAACTGA............             read_199495_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      2A19   
.................................................tTGCAAATCTATGCAAAACTGA............             read_266405_0_0_0_1_0_0       MATURE            1         0.06            0         0.00            1         0.13                        21   
.................................................GTGCAAATCTATaCAAAACTGA............             read_185406_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      12A9   
.................................................GTGCAAATCTATGCAAAcCTGA............             read_324075_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      17C4   
..................................................TGCAAATCTATGCAAAACTG.............              read_83960_0_0_0_0_0_1       MATURE            1         0.06            0         0.00            1         0.13                        20   
.................................................tTGCAAATCTATGCAAAACTGc............             read_404369_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            c           20   
.................................................GTGCAAATtTATGCAAAACTG.............             read_248736_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      8T12   
.................................................GTGCAAAcCTATGCAAAACTGt............              read_14586_0_0_0_1_0_0       MATURE            1         0.06            0         0.00            1         0.13            t         7C13   
.................................................GTGCAAATCTATGCAAAACTGAat..........              read_10613_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13           at           22   
.................................................GTGCAAgTCTATGCAAAACTGA............             read_260671_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      6G15   
.................................................GTGCAAATCTATGCAAAACTGc............              read_18531_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13            c           21   
.................................................GTGCAAATCTATGCAgAACTGA............              read_43361_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13                      15G6   
......................................................AATCTATGCAAAACTGA............             read_323333_0_0_0_0_0_1       MATURE            1         0.06            0         0.00            1         0.13                        17   
.................................................GTGCAAATCTATGCAAAAata.............             read_167459_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00          ata           18   
.................................................GTGCAAATCTATGCAAAACcGA............              read_68802_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      19C2   
.................................................GTGCAAATCTATGCAAAACTGga...........             read_338036_0_0_0_0_0_1       MATURE            1         0.06            0         0.00            1         0.13           ga           21   
.................................................GTGCAAATCTATGCAAAACg..............              read_51970_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            g           19   
.................................................aTGCAAATCTATGCAAAACTGA............             read_229164_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                        21   
.................................................GTGCAAATCTATGCAAAACTct............             read_213295_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00           ct           20   
.................................................GTGCAAATCTATGCcAAACTGA............             read_349641_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13                      14C7   
.................................................GTGCAAATCTATGCAAAACTc.............             read_276728_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            c           20   
.................................................GTGCAAATCTATtCAAAACTG.............             read_248971_0_0_0_0_0_1       MATURE            1         0.06            0         0.00            1         0.13                      12T8   
................................................TGTGCAAATCTATGCAAA.................             read_117892_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                        18   
.................................................GTGCAAATCTAcGCAAAACTG.............              read_90493_0_0_0_0_0_1       MATURE            1         0.06            0         0.00            1         0.13                      11C9   
.................................................aTGCAAATCTATGCAAAACTG.............             read_231645_0_0_0_1_0_0       MATURE            1         0.06            0         0.00            1         0.13                        20   
.................................................GTGCAAATCTATGCAAAACaGA............             read_332416_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      19A2   
.................................................GTGCAAATCTATaCAAAACTGt............              read_20741_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13            t         12A8   
.................................................GTGgAAATCTATGCAAAACTG.............             read_272452_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      3G17   
.................................................GTGCAAATCTATGaAAAACTGt............             read_208305_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            t         13A7   
.................................................GTGtAAATCTATGCAAAACTGA............             read_271753_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      3T18   
.................................................GTGCAAATCTATGCAAAACat.............             read_111913_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00           at           19   
.................................................GTGaAAATCTATGCAAAACTGA............             read_242503_1_0_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      3A18   
.................................................GTGCAAATCTATGCAAAAaTG.............              read_68643_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      18A2   
.................................................GTGCAAATCTATGtAAAACTGt............             read_109249_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00            t         13T7   
.................................................GTGCAgATCTATGCAAAACTG.............              read_58381_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      5G15   
................................................aGTGCAAATCTATGCAAAACTG.............             read_138629_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                        21   
.................................................GTGCAAATCTATGCAtAACTG.............             read_312330_0_0_0_1_0_0       MATURE            1         0.06            0         0.00            1         0.13                      15T5   
.................................................GTGCAAATCTATGCAAAAtctga...........             read_332293_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00        tctga           18   
.................................................GTGCAAtTCTATGCAAAACTGA............             read_174018_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      6T15   
.................................................GTGCAAATCTATGCAAAACcg.............             read_302587_0_1_0_0_0_0       MATURE            1         0.06            1         0.12            0         0.00           cg           19   
.................................................GTGCAAATCTATGaAAAACT..............              read_84781_0_0_1_0_0_0       MATURE            1         0.06            1         0.12            0         0.00                      13A6   
.................................................GTGCAAATCTATGCAAAACTtc............             read_109347_0_0_0_0_1_0       MATURE            1         0.06            0         0.00            1         0.13           tc           20   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                             1651                       869                       782                                          
                                                                                                                                                                    (52.63)                   (47.37)                                       




*** MATURESTAR ***
__________________________________________________________________________________
GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC REF                  14                   115443222 - 115443303 
                                                TGTGCAAATCTATGCAAAACTGA            MATURE               14                   115443271 - 115443374 mmu-miR-19a          +                    
            TAGTTTTGCATAGTTGCACTAC                                                 MATURESTAR           14                   115443235 - 115443337 mmu-miR-19a*         +                    
__________________________________________________________________________________

                                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............AGTTTTGCATAGTTGCACT...................................................   read_289211_0_1_1_2_1_0   MATURESTAR            5        45.45            2        28.57            3        75.00                        19   
.............AGTTTTGCATAGTTGCACTAt.................................................   read_205349_1_0_1_0_0_0   MATURESTAR            2        18.18            2        28.57            0         0.00            t           20   
.............AGTTTTGCATAGTTGCACTA..................................................    read_34665_1_0_0_0_0_0   MATURESTAR            1         9.09            1        14.29            0         0.00                        20   
.............AGTTTTGCATAGTTGCAC....................................................    read_63668_1_0_0_0_0_0   MATURESTAR            1         9.09            1        14.29            0         0.00                        18   
.............AGTTTTGCATAGTTGCACTAC.................................................   read_230494_0_1_0_0_0_0   MATURESTAR            1         9.09            1        14.29            0         0.00                        21   
.................TTGCATAGTTGCACTAC.................................................   read_285090_0_0_0_0_0_1   MATURESTAR            1         9.09            0         0.00            1        25.00                        17   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                     11                         7                         4                                          
                                                                                                                                                          (63.64)                   (36.36)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             869             782            1651          99.34%
     MATURESTAR               7               4              11           0.66%
                     ----------      ----------      ----------                
                            876             786            1662                



[END]
