[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************************
ID : mmu-mir-19a
DESCRIPTION : mmu-mir-19a MI0000688 Mus musculus miR-19a stem-loop
CHROMOSOME : 14
SPAN : 115443222 - 115443303
LENGTH : 82
SEQUENCE : GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-19a
ACCID : MI0000688
PARENT : mmu-mir-19a
CHROMOSOME : 14
START : 115443222
STOP : 115443303
OFFSET : 49..71
SEQUENCE : TGTGCAAATCTATGCAAAACTGA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-19a*
ACCID : MI0000688
PARENT : mmu-mir-19a
CHROMOSOME : 14
START : 115443222
STOP : 115443303
OFFSET : 13..34
SEQUENCE : TAGTTTTGCATAGTTGCACTAC
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________
GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC REF 14 115443222 - 115443303
TGTGCAAATCTATGCAAAACTGA MATURE 14 115443271 - 115443374 mmu-miR-19a +
TAGTTTTGCATAGTTGCACTAC MATURESTAR 14 115443235 - 115443337 mmu-miR-19a* +
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................GTGCAAATCTATGCAAAACTGA............ read_78398_97_147_141_100_129_134 MATURE 748 45.31 385 44.30 363 46.42 22
.................................................GTGCAAATCTATGCAAAACTG............. read_186714_62_65_81_50_57_64 MATURE 379 22.96 208 23.94 171 21.87 21
.................................................GTGCAAATCTATGCAAAACTGt............ read_267688_21_36_25_13_28_29 MATURE 152 9.21 82 9.44 70 8.95 t 21
.................................................GTGCAAATCTATGCAAAACT.............. read_117488_14_15_13_16_17_32 MATURE 107 6.48 42 4.83 65 8.31 20
................................................TGTGCAAATCTATGCAAAACTG............. read_171596_7_6_7_4_1_5 MATURE 30 1.82 20 2.30 10 1.28 22
................................................TGTGCAAATCTATGCAAAACTGA............ read_327904_5_6_7_2_5_4 MATURE 29 1.76 18 2.07 11 1.41 23
.................................................GTGCAAATCTATGCAAAACTGAT........... read_145808_7_4_5_5_1_3 MATURE 25 1.51 16 1.84 9 1.15 23
................................................TGTGCAAATCTATGCAAAACT.............. read_270409_2_5_0_4_3_5 MATURE 19 1.15 7 0.81 12 1.53 21
.................................................GTGCAAATCTATGCAAAA................ read_2841_1_4_4_3_2_3 MATURE 17 1.03 9 1.04 8 1.02 18
................................................TGTGCAAATCTATGCAAAACTGt............ read_373879_1_2_5_1_0_0 MATURE 9 0.55 8 0.92 1 0.13 t 22
.................................................GTGCAAATCTATGaAAAACTGA............ read_109548_1_0_4_1_2_0 MATURE 8 0.48 5 0.58 3 0.38 13A8
.....................................................AAATCTATGCAAAACTG............. read_99839_0_0_0_0_3_2 MATURE 5 0.30 0 0.00 5 0.64 17
.................................................GTGCAAATCTATGCAAAAC............... read_357513_0_0_0_2_0_3 MATURE 5 0.30 0 0.00 5 0.64 19
.................................................GTGCAAATCTATGCAAAACTGAa........... read_325605_0_0_3_0_1_0 MATURE 4 0.24 3 0.35 1 0.13 a 22
.................................................GTGCAAATCTATGCAAAgCTG............. read_283419_0_1_1_1_0_1 MATURE 4 0.24 2 0.23 2 0.26 17G3
.................................................GTGCAAATCTATGaAAAACTG............. read_167038_1_1_0_1_0_1 MATURE 4 0.24 2 0.23 2 0.26 13A7
.................................................GTGCAAATCTATGCAAAAtTGA............ read_352642_1_1_1_0_1_0 MATURE 4 0.24 3 0.35 1 0.13 18T3
.................................................GTGCAAATCTAcGCAAAACTGA............ read_297439_0_0_2_0_1_1 MATURE 4 0.24 2 0.23 2 0.26 11C10
.................................................GTGCAAATCTATGCgAAACTG............. read_321776_2_0_0_1_0_0 MATURE 3 0.18 2 0.23 1 0.13 14G6
.................................................GTGCAAATCaATGCAAAACTG............. read_79324_1_1_1_0_0_0 MATURE 3 0.18 3 0.35 0 0.00 9A11
.................................................GTGCAAATCTATGCAAgACTG............. read_230813_1_0_0_0_1_1 MATURE 3 0.18 1 0.12 2 0.26 16G4
.................................................GTGCAAATCTATGCAAAACTGtt........... read_343190_1_0_0_1_0_1 MATURE 3 0.18 1 0.12 2 0.26 tt 21
................................................TGTGCAAATCTATGCAAAAC............... read_218213_0_0_0_2_1_0 MATURE 3 0.18 0 0.00 3 0.38 20
.................................................GTGCAAATCTATGCAAAcCTG............. read_24716_0_0_0_0_0_3 MATURE 3 0.18 0 0.00 3 0.38 17C3
.................................................GTGCAAATCTATGCAAgACTGA............ read_226573_1_0_0_1_0_0 MATURE 2 0.12 1 0.12 1 0.13 16G5
................................................TGTGCAAATCTATGCAAAACTGAT........... read_327182_0_1_0_0_0_1 MATURE 2 0.12 1 0.12 1 0.13 24
.................................................GTGCAAAcCTATGCAAAACTGA............ read_213887_0_1_1_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 7C14
.................................................cTGCAAATCTATGCAAAACTGA............ read_113337_1_0_1_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 21
.................................................GTGCAAATCTATGCAAAACTt............. read_299654_0_0_0_1_1_0 MATURE 2 0.12 0 0.00 2 0.26 t 20
.................................................GTGCAAATCTATGCAAAACTGATt.......... read_308036_0_0_1_0_0_1 MATURE 2 0.12 1 0.12 1 0.13 t 23
.................................................GTGCAAATCTATGCgAAACTGt............ read_90211_2_0_0_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 t 14G6
.................................................GTGCAAATCTATGCAAA................. read_244941_0_0_0_0_0_2 MATURE 2 0.12 0 0.00 2 0.26 17
.................................................GTGCAAATCTATaCAAAACTG............. read_354476_0_1_0_0_1_0 MATURE 2 0.12 1 0.12 1 0.13 12A8
.....................................................AAATCTATGCAAAACTGA............ read_90851_0_0_1_0_0_1 MATURE 2 0.12 1 0.12 1 0.13 18
.................................................GTGCAAATCTATGCAAAAaTGA............ read_251087_2_0_0_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 18A3
.................................................GTGCAAATCTATGCAAAACTta............ read_332641_1_0_0_0_0_1 MATURE 2 0.12 1 0.12 1 0.13 ta 20
.................................................GTGCAAATCTATGCAAAACTGg............ read_71920_0_2_0_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 g 21
.................................................GTGCAAATCTATGCgAAACTGA............ read_83514_2_0_0_0_0_0 MATURE 2 0.12 2 0.23 0 0.00 14G7
.................................................GTGCAAATCTATGCAAAAtTGt............ read_326544_0_0_0_0_0_2 MATURE 2 0.12 0 0.00 2 0.26 t 18T2
.................................................cTGCAAATCTATGCAAAACTG............. read_155453_0_0_1_1_0_0 MATURE 2 0.12 1 0.12 1 0.13 20
................................................TGTGCAAATCTATGCgAAACTGA............ read_227002_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 15G7
................................................TGTGCAAATCTATGtAAAACTGt............ read_348130_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 t 14T7
.................................................GTGCAAATCTATGCAgAACTG............. read_214464_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 15G5
.................................................GTGCAAATCTATGCAAAACgg............. read_165828_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 gg 19
.................................................cTGCAAATCTATGCAAAACTGt............ read_165430_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 t 20
.................................................GTGCAAATCTATGCAAAACTa............. read_279293_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 a 20
.................................................GTaCAAATCTATGCAAAACTGA............ read_199495_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 2A19
.................................................tTGCAAATCTATGCAAAACTGA............ read_266405_0_0_0_1_0_0 MATURE 1 0.06 0 0.00 1 0.13 21
.................................................GTGCAAATCTATaCAAAACTGA............ read_185406_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 12A9
.................................................GTGCAAATCTATGCAAAcCTGA............ read_324075_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 17C4
..................................................TGCAAATCTATGCAAAACTG............. read_83960_0_0_0_0_0_1 MATURE 1 0.06 0 0.00 1 0.13 20
.................................................tTGCAAATCTATGCAAAACTGc............ read_404369_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 c 20
.................................................GTGCAAATtTATGCAAAACTG............. read_248736_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 8T12
.................................................GTGCAAAcCTATGCAAAACTGt............ read_14586_0_0_0_1_0_0 MATURE 1 0.06 0 0.00 1 0.13 t 7C13
.................................................GTGCAAATCTATGCAAAACTGAat.......... read_10613_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 at 22
.................................................GTGCAAgTCTATGCAAAACTGA............ read_260671_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 6G15
.................................................GTGCAAATCTATGCAAAACTGc............ read_18531_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 c 21
.................................................GTGCAAATCTATGCAgAACTGA............ read_43361_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 15G6
......................................................AATCTATGCAAAACTGA............ read_323333_0_0_0_0_0_1 MATURE 1 0.06 0 0.00 1 0.13 17
.................................................GTGCAAATCTATGCAAAAata............. read_167459_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 ata 18
.................................................GTGCAAATCTATGCAAAACcGA............ read_68802_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 19C2
.................................................GTGCAAATCTATGCAAAACTGga........... read_338036_0_0_0_0_0_1 MATURE 1 0.06 0 0.00 1 0.13 ga 21
.................................................GTGCAAATCTATGCAAAACg.............. read_51970_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 g 19
.................................................aTGCAAATCTATGCAAAACTGA............ read_229164_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 21
.................................................GTGCAAATCTATGCAAAACTct............ read_213295_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 ct 20
.................................................GTGCAAATCTATGCcAAACTGA............ read_349641_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 14C7
.................................................GTGCAAATCTATGCAAAACTc............. read_276728_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 c 20
.................................................GTGCAAATCTATtCAAAACTG............. read_248971_0_0_0_0_0_1 MATURE 1 0.06 0 0.00 1 0.13 12T8
................................................TGTGCAAATCTATGCAAA................. read_117892_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 18
.................................................GTGCAAATCTAcGCAAAACTG............. read_90493_0_0_0_0_0_1 MATURE 1 0.06 0 0.00 1 0.13 11C9
.................................................aTGCAAATCTATGCAAAACTG............. read_231645_0_0_0_1_0_0 MATURE 1 0.06 0 0.00 1 0.13 20
.................................................GTGCAAATCTATGCAAAACaGA............ read_332416_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 19A2
.................................................GTGCAAATCTATaCAAAACTGt............ read_20741_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 t 12A8
.................................................GTGgAAATCTATGCAAAACTG............. read_272452_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 3G17
.................................................GTGCAAATCTATGaAAAACTGt............ read_208305_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 t 13A7
.................................................GTGtAAATCTATGCAAAACTGA............ read_271753_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 3T18
.................................................GTGCAAATCTATGCAAAACat............. read_111913_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 at 19
.................................................GTGaAAATCTATGCAAAACTGA............ read_242503_1_0_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 3A18
.................................................GTGCAAATCTATGCAAAAaTG............. read_68643_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 18A2
.................................................GTGCAAATCTATGtAAAACTGt............ read_109249_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 t 13T7
.................................................GTGCAgATCTATGCAAAACTG............. read_58381_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 5G15
................................................aGTGCAAATCTATGCAAAACTG............. read_138629_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 21
.................................................GTGCAAATCTATGCAtAACTG............. read_312330_0_0_0_1_0_0 MATURE 1 0.06 0 0.00 1 0.13 15T5
.................................................GTGCAAATCTATGCAAAAtctga........... read_332293_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 tctga 18
.................................................GTGCAAtTCTATGCAAAACTGA............ read_174018_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 6T15
.................................................GTGCAAATCTATGCAAAACcg............. read_302587_0_1_0_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 cg 19
.................................................GTGCAAATCTATGaAAAACT.............. read_84781_0_0_1_0_0_0 MATURE 1 0.06 1 0.12 0 0.00 13A6
.................................................GTGCAAATCTATGCAAAACTtc............ read_109347_0_0_0_0_1_0 MATURE 1 0.06 0 0.00 1 0.13 tc 20
---------- ---------- ----------
1651 869 782
(52.63) (47.37)
*** MATURESTAR ***
__________________________________________________________________________________
GCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC REF 14 115443222 - 115443303
TGTGCAAATCTATGCAAAACTGA MATURE 14 115443271 - 115443374 mmu-miR-19a +
TAGTTTTGCATAGTTGCACTAC MATURESTAR 14 115443235 - 115443337 mmu-miR-19a* +
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............AGTTTTGCATAGTTGCACT................................................... read_289211_0_1_1_2_1_0 MATURESTAR 5 45.45 2 28.57 3 75.00 19
.............AGTTTTGCATAGTTGCACTAt................................................. read_205349_1_0_1_0_0_0 MATURESTAR 2 18.18 2 28.57 0 0.00 t 20
.............AGTTTTGCATAGTTGCACTA.................................................. read_34665_1_0_0_0_0_0 MATURESTAR 1 9.09 1 14.29 0 0.00 20
.............AGTTTTGCATAGTTGCAC.................................................... read_63668_1_0_0_0_0_0 MATURESTAR 1 9.09 1 14.29 0 0.00 18
.............AGTTTTGCATAGTTGCACTAC................................................. read_230494_0_1_0_0_0_0 MATURESTAR 1 9.09 1 14.29 0 0.00 21
.................TTGCATAGTTGCACTAC................................................. read_285090_0_0_0_0_0_1 MATURESTAR 1 9.09 0 0.00 1 25.00 17
---------- ---------- ----------
11 7 4
(63.64) (36.36)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 869 782 1651 99.34%
MATURESTAR 7 4 11 0.66%
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876 786 1662
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