[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-199b
DESCRIPTION : mmu-mir-199b MI0000714 Mus musculus miR-199b stem-loop
CHROMOSOME : 2
SPAN : 32173980 - 32174089
LENGTH : 110
SEQUENCE : CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-199b
ACCID : MI0000714
PARENT : mmu-mir-199b
CHROMOSOME : 2
START : 32173980
STOP : 32174089
OFFSET : 65..86
SEQUENCE : ACAGTAGTCTGCACATTGGTTA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-199b*
ACCID : MI0000714
PARENT : mmu-mir-199b
CHROMOSOME : 2
START : 32173980
STOP : 32174089
OFFSET : 26..48
SEQUENCE : CCCAGTGTTTAGACTACCTGTTC
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________________________________
CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG REF 2 32173980 - 32174089
ACAGTAGTCTGCACATTGGTTA MATURE 2 32174045 - 32174175 mmu-miR-199b +
CCCAGTGTTTAGACTACCTGTTC MATURESTAR 2 32174006 - 32174137 mmu-miR-199b* +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................AGTAGTCTGCACATTGGTT.......................... read_226611_0_1_1_0_0_1 MATURE 3 23.08 2 22.22 1 25.00 19
.................................................................CAGTAGTCTGCACATTGGTT.......................... read_71199_0_0_1_0_0_1 MATURE 2 15.38 1 11.11 1 25.00 20
.................................................................CAGTAGTCTGCACATTGGT........................... read_370706_1_0_0_0_1_0 MATURE 2 15.38 1 11.11 1 25.00 19
.................................................................CAGTAGTCTGCACATTGGTTA......................... read_356189_0_1_0_0_0_1 MATURE 2 15.38 1 11.11 1 25.00 21
..................................................................AGTAGTCTGCACATTGGTTAtt....................... read_17313_0_0_1_0_0_0 MATURE 1 7.69 1 11.11 0 0.00 tt 20
.................................................................CAGTAGTCTGCACATTGGTTAt........................ read_321934_0_1_0_0_0_0 MATURE 1 7.69 1 11.11 0 0.00 t 21
.................................................................CAGTAGTCTGCACATTGGTTAa........................ read_239363_1_0_0_0_0_0 MATURE 1 7.69 1 11.11 0 0.00 a 21
.................................................................CAGTAGTCTGCACATTGGTTt......................... read_283711_0_1_0_0_0_0 MATURE 1 7.69 1 11.11 0 0.00 t 20
---------- ---------- ----------
13 9 4
(69.23) (30.77)
*** MATURESTAR ***
______________________________________________________________________________________________________________
CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG REF 2 32173980 - 32174089
ACAGTAGTCTGCACATTGGTTA MATURE 2 32174045 - 32174175 mmu-miR-199b +
CCCAGTGTTTAGACTACCTGTTC MATURESTAR 2 32174006 - 32174137 mmu-miR-199b* +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................CCAGTGTTTAGACTAtCTGT................................................................. read_393726_1_0_0_0_0_0 MATURESTAR 1 100.00 1 100.00 0 0 15T4
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 9 4 13 92.86%
MATURESTAR 1 0 1 7.14%
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10 4 14
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