[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************************
ID                 : mmu-mir-199a-2
DESCRIPTION        : mmu-mir-199a-2 MI0000713 Mus musculus miR-199a-2 stem-loop
CHROMOSOME         : 1
SPAN               : 164147945 - 164148054
LENGTH             : 110
SEQUENCE           : TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-199a-3p
ACCID      : MI0000713
PARENT     : mmu-mir-199a-2
CHROMOSOME : 1
START      : 164147945
STOP       : 164148054
OFFSET     : 70..91
SEQUENCE   : ACAGTAGTCTGCACATTGGTTA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-199a-5p
ACCID      : MI0000713
PARENT     : mmu-mir-199a-2
CHROMOSOME : 1
START      : 164147945
STOP       : 164148054
OFFSET     : 31..53
SEQUENCE   : CCCAGTGTTCAGACTACCTGTTC
STRAND     : +
******************************



*** MATURE-3P ***
______________________________________________________________________________________________________________
TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA REF                  1                    164147945 - 164148054 
                                                                     ACAGTAGTCTGCACATTGGTTA                    MATURE-3P            1                    164148015 - 164148145 mmu-miR-199a-3p      +                    
                              CCCAGTGTTCAGACTACCTGTTC                                                          MATURE-5P            1                    164147976 - 164148107 mmu-miR-199a-5p      +                    
______________________________________________________________________________________________________________

                                                                                                          -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................................................................AGTAGTCTGCACATTGGTT.....................   read_226611_0_1_1_0_0_1    MATURE-3P            3        23.08            2        22.22            1        25.00                        19   
......................................................................CAGTAGTCTGCACATTGGTT.....................    read_71199_0_0_1_0_0_1    MATURE-3P            2        15.38            1        11.11            1        25.00                        20   
......................................................................CAGTAGTCTGCACATTGGT......................   read_370706_1_0_0_0_1_0    MATURE-3P            2        15.38            1        11.11            1        25.00                        19   
......................................................................CAGTAGTCTGCACATTGGTTA....................   read_356189_0_1_0_0_0_1    MATURE-3P            2        15.38            1        11.11            1        25.00                        21   
.......................................................................AGTAGTCTGCACATTGGTTAtt..................    read_17313_0_0_1_0_0_0    MATURE-3P            1         7.69            1        11.11            0         0.00           tt           20   
......................................................................CAGTAGTCTGCACATTGGTTAt...................   read_321934_0_1_0_0_0_0    MATURE-3P            1         7.69            1        11.11            0         0.00            t           21   
......................................................................CAGTAGTCTGCACATTGGTTAa...................   read_239363_1_0_0_0_0_0    MATURE-3P            1         7.69            1        11.11            0         0.00            a           21   
......................................................................CAGTAGTCTGCACATTGGTTt....................   read_283711_0_1_0_0_0_0    MATURE-3P            1         7.69            1        11.11            0         0.00            t           20   
                                                                                                                                                         ----------                ----------                ----------   
                                                                                                                                                                 13                         9                         4                                          
                                                                                                                                                                                      (69.23)                   (30.77)                                       




*** MATURE-5P ***
______________________________________________________________________________________________________________
TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA REF                  1                    164147945 - 164148054 
                                                                     ACAGTAGTCTGCACATTGGTTA                    MATURE-3P            1                    164148015 - 164148145 mmu-miR-199a-3p      +                    
                              CCCAGTGTTCAGACTACCTGTTC                                                          MATURE-5P            1                    164147976 - 164148107 mmu-miR-199a-5p      +                    
______________________________________________________________________________________________________________

                                                                                                          -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................CCAGTGTTCAGACTACCTGTTC..........................................................   read_148089_0_0_1_0_0_0    MATURE-5P            1        50.00            1        50.00            0            0                        22   
...............................CCAGTGTTCAGACTACCTGT............................................................    read_82254_0_0_1_0_0_0    MATURE-5P            1        50.00            1        50.00            0            0                        20   
                                                                                                                                                         ----------                ----------                ----------   
                                                                                                                                                                  2                         2                         0                                          
                                                                                                                                                                                     (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               9               4              13          86.67%
      MATURE-5P               2               0               2          13.33%
                     ----------      ----------      ----------                
                             11               4              15                



[END]
