[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************************
ID : mmu-mir-199a-2
DESCRIPTION : mmu-mir-199a-2 MI0000713 Mus musculus miR-199a-2 stem-loop
CHROMOSOME : 1
SPAN : 164147945 - 164148054
LENGTH : 110
SEQUENCE : TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-199a-3p
ACCID : MI0000713
PARENT : mmu-mir-199a-2
CHROMOSOME : 1
START : 164147945
STOP : 164148054
OFFSET : 70..91
SEQUENCE : ACAGTAGTCTGCACATTGGTTA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-199a-5p
ACCID : MI0000713
PARENT : mmu-mir-199a-2
CHROMOSOME : 1
START : 164147945
STOP : 164148054
OFFSET : 31..53
SEQUENCE : CCCAGTGTTCAGACTACCTGTTC
STRAND : +
******************************
*** MATURE-3P ***
______________________________________________________________________________________________________________
TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA REF 1 164147945 - 164148054
ACAGTAGTCTGCACATTGGTTA MATURE-3P 1 164148015 - 164148145 mmu-miR-199a-3p +
CCCAGTGTTCAGACTACCTGTTC MATURE-5P 1 164147976 - 164148107 mmu-miR-199a-5p +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................................................................AGTAGTCTGCACATTGGTT..................... read_226611_0_1_1_0_0_1 MATURE-3P 3 23.08 2 22.22 1 25.00 19
......................................................................CAGTAGTCTGCACATTGGTT..................... read_71199_0_0_1_0_0_1 MATURE-3P 2 15.38 1 11.11 1 25.00 20
......................................................................CAGTAGTCTGCACATTGGT...................... read_370706_1_0_0_0_1_0 MATURE-3P 2 15.38 1 11.11 1 25.00 19
......................................................................CAGTAGTCTGCACATTGGTTA.................... read_356189_0_1_0_0_0_1 MATURE-3P 2 15.38 1 11.11 1 25.00 21
.......................................................................AGTAGTCTGCACATTGGTTAtt.................. read_17313_0_0_1_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 tt 20
......................................................................CAGTAGTCTGCACATTGGTTAt................... read_321934_0_1_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 t 21
......................................................................CAGTAGTCTGCACATTGGTTAa................... read_239363_1_0_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 a 21
......................................................................CAGTAGTCTGCACATTGGTTt.................... read_283711_0_1_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 t 20
---------- ---------- ----------
13 9 4
(69.23) (30.77)
*** MATURE-5P ***
______________________________________________________________________________________________________________
TGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCA REF 1 164147945 - 164148054
ACAGTAGTCTGCACATTGGTTA MATURE-3P 1 164148015 - 164148145 mmu-miR-199a-3p +
CCCAGTGTTCAGACTACCTGTTC MATURE-5P 1 164147976 - 164148107 mmu-miR-199a-5p +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................CCAGTGTTCAGACTACCTGTTC.......................................................... read_148089_0_0_1_0_0_0 MATURE-5P 1 50.00 1 50.00 0 0 22
...............................CCAGTGTTCAGACTACCTGT............................................................ read_82254_0_0_1_0_0_0 MATURE-5P 1 50.00 1 50.00 0 0 20
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 9 4 13 86.67%
MATURE-5P 2 0 2 13.33%
---------- ---------- ----------
11 4 15
[END]