[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-199a-1
DESCRIPTION : mmu-mir-199a-1 MI0000241 Mus musculus miR-199a-1 stem-loop
CHROMOSOME : 9
SPAN : 21300939 - 21301008
LENGTH : 70
SEQUENCE : GCCATCCCAGTGTTCAGACTACCTGTTCAGGAGGCTGGGACATGTACAGTAGTCTGCACATTGGTTAGGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************
TARGET
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CATEGORY : MATURE-3P
ID : mmu-miR-199a-3p
ACCID : MI0000241
PARENT : mmu-mir-199a-1
CHROMOSOME : 9
START : 21300939
STOP : 21301008
OFFSET : 46..67
SEQUENCE : ACAGTAGTCTGCACATTGGTTA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-199a-5p
ACCID : MI0000241
PARENT : mmu-mir-199a-1
CHROMOSOME : 9
START : 21300939
STOP : 21301008
OFFSET : 6..28
SEQUENCE : CCCAGTGTTCAGACTACCTGTTC
STRAND : -
******************************
*** MATURE-3P ***
______________________________________________________________________
GCCATCCCAGTGTTCAGACTACCTGTTCAGGAGGCTGGGACATGTACAGTAGTCTGCACATTGGTTAGGC REF 9 21300939 - 21301008
ACAGTAGTCTGCACATTGGTTA MATURE-3P 9 21300985 - 21301075 mmu-miR-199a-3p -
CCCAGTGTTCAGACTACCTGTTC MATURE-5P 9 21300945 - 21301036 mmu-miR-199a-5p -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................AGTAGTCTGCACATTGGTT..... read_226611_0_1_1_0_0_1 MATURE-3P 3 23.08 2 22.22 1 25.00 19
..............................................CAGTAGTCTGCACATTGGTT..... read_71199_0_0_1_0_0_1 MATURE-3P 2 15.38 1 11.11 1 25.00 20
..............................................CAGTAGTCTGCACATTGGT...... read_370706_1_0_0_0_1_0 MATURE-3P 2 15.38 1 11.11 1 25.00 19
..............................................CAGTAGTCTGCACATTGGTTA.... read_356189_0_1_0_0_0_1 MATURE-3P 2 15.38 1 11.11 1 25.00 21
...............................................AGTAGTCTGCACATTGGTTAtt.. read_17313_0_0_1_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 tt 20
..............................................CAGTAGTCTGCACATTGGTTAt... read_321934_0_1_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 t 21
..............................................CAGTAGTCTGCACATTGGTTAa... read_239363_1_0_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 a 21
..............................................CAGTAGTCTGCACATTGGTTt.... read_283711_0_1_0_0_0_0 MATURE-3P 1 7.69 1 11.11 0 0.00 t 20
---------- ---------- ----------
13 9 4
(69.23) (30.77)
*** MATURE-5P ***
______________________________________________________________________
GCCATCCCAGTGTTCAGACTACCTGTTCAGGAGGCTGGGACATGTACAGTAGTCTGCACATTGGTTAGGC REF 9 21300939 - 21301008
ACAGTAGTCTGCACATTGGTTA MATURE-3P 9 21300985 - 21301075 mmu-miR-199a-3p -
CCCAGTGTTCAGACTACCTGTTC MATURE-5P 9 21300945 - 21301036 mmu-miR-199a-5p -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......CCAGTGTTCAGACTACCTGTTC........................................... read_148089_0_0_1_0_0_0 MATURE-5P 1 50.00 1 50.00 0 0 22
......CCAGTGTTCAGACTACCTGT............................................. read_82254_0_0_1_0_0_0 MATURE-5P 1 50.00 1 50.00 0 0 20
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 9 4 13 86.67%
MATURE-5P 2 0 2 13.33%
---------- ---------- ----------
11 4 15
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