[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************
ID                 : mmu-mir-196a-2
DESCRIPTION        : mmu-mir-196a-2 MI0000553 Mus musculus miR-196a-2 stem-loop
CHROMOSOME         : 15
SPAN               : 102803781 - 102803865
LENGTH             : 85
SEQUENCE           : AGCTGATCTGTGGCTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTC
OVERHANG THRESHOLD : 75%
**********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-196a
ACCID      : MI0000553
PARENT     : mmu-mir-196a-2
CHROMOSOME : 15
START      : 102803781
STOP       : 102803865
OFFSET     : 16..37
SEQUENCE   : TAGGTAGTTTCATGTTGTTGGG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-196a*
ACCID      : MI0000553
PARENT     : mmu-mir-196a-2
CHROMOSOME : 15
START      : 102803781
STOP       : 102803865
OFFSET     : 52..73
SEQUENCE   : TCGGCAACAAGAAACTGCCTGA
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________
AGCTGATCTGTGGCTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTC REF                  15                   102803781 - 102803865 
               TAGGTAGTTTCATGTTGTTGGG                                                 MATURE               15                   102803797 - 102803902 mmu-miR-196a         +                    
                                                   TCGGCAACAAGAAACTGCCTGA             MATURESTAR           15                   102803833 - 102803938 mmu-miR-196a*        +                    
_____________________________________________________________________________________

                                                                                 -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................AGGTAGTTTCATGTTGTTGGGg................................................   read_300488_0_1_0_0_0_0       MATURE            1       100.00            1       100.00            0            0            g           21   
                                                                                                                                ----------                ----------                ----------   
                                                                                                                                         1                         1                         0                                          
                                                                                                                                                            (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               0               1         100.00%
                     ----------      ----------      ----------                
                              1               0               1                



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