[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-1964
DESCRIPTION        : mmu-mir-1964 MI0009961 Mus musculus miR-1964 stem-loop
CHROMOSOME         : 7
SPAN               : 30558313 - 30558395
LENGTH             : 83
SEQUENCE           : CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA
OVERHANG THRESHOLD : 75%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1964
ACCID      : MI0009961
PARENT     : mmu-mir-1964
CHROMOSOME : 7
START      : 30558313
STOP       : 30558395
OFFSET     : 51..72
SEQUENCE   : CCGACTTCTGGGCTCCGGCTTT
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF                  7                    30558313 - 30558395  
                                                  CCGACTTCTGGGCTCCGGCTTT            MATURE               7                    30558364 - 30558467  mmu-miR-1964         +                    
___________________________________________________________________________________

                                                                               -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................CGACTTCTGGGCTCCGGCTTT............   read_401614_1_1_2_1_0_2       MATURE            7        36.84            4        36.36            3        37.50                        21   
...................................................CGACTTCTGGGCTCCGGCTT.............   read_310136_1_0_0_1_2_1       MATURE            5        26.32            1         9.09            4        50.00                        20   
...................................................CGACTTCTGGGCTCCGGCTTTt...........   read_123486_0_2_0_0_0_0       MATURE            2        10.53            2        18.18            0         0.00            t           21   
...................................................CGACTTCTGGGCTCCGGCTTat...........    read_49718_0_0_1_0_0_0       MATURE            1         5.26            1         9.09            0         0.00           at           20   
...................................................CGACTTCTGGGCTCCGGCTTTGt..........   read_105471_1_0_0_0_0_0       MATURE            1         5.26            1         9.09            0         0.00            t           22   
..................................................CCGACTTCTGGGCTCCGGCTT.............   read_350161_1_0_0_0_0_0       MATURE            1         5.26            1         9.09            0         0.00                        21   
...................................................CGACTTCTGGGCTCCtGCTTT............   read_137051_0_1_0_0_0_0       MATURE            1         5.26            1         9.09            0         0.00                      15T5   
...................................................CGACTTCTGGGCTCCGGCTTTttt.........   read_155308_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        12.50          ttt           21   
                                                                                                                              ----------                ----------                ----------   
                                                                                                                                      19                        11                         8                                          
                                                                                                                                                           (57.89)                   (42.11)                                       




*** OTHER ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF                  7                    30558313 - 30558395  
                                                  CCGACTTCTGGGCTCCGGCTTT            MATURE               7                    30558364 - 30558467  mmu-miR-1964         +                    
___________________________________________________________________________________

                                                                               -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............GCTGGAGCACAAAAGCCGGTGt..................................................   read_369779_0_0_2_0_0_1        OTHER            3        27.27            2        28.57            1        25.00            t           21   
............GCTGGAGCACAAAAGCCGGT....................................................   read_149236_0_0_0_2_0_0        OTHER            2        18.18            0         0.00            2        50.00                        20   
............GCTGGAGCACAAAAGCCGGTGttt................................................    read_74237_0_0_0_0_0_1        OTHER            1         9.09            0         0.00            1        25.00          ttt           21   
............GCTGGAGCACAAAAGCCGGTG...................................................   read_105199_0_1_0_0_0_0        OTHER            1         9.09            1        14.29            0         0.00                        21   
............GCTGGAGCACAAAAGCCGGTGtt.................................................   read_377570_1_0_0_0_0_0        OTHER            1         9.09            1        14.29            0         0.00           tt           21   
............GCTGGAGCACAAAAGCCGGTGa..................................................     read_3330_0_1_0_0_0_0        OTHER            1         9.09            1        14.29            0         0.00            a           21   
............GCTGGAGCACAAAAGCCGGTGC..................................................   read_121068_1_0_0_0_0_0        OTHER            1         9.09            1        14.29            0         0.00                        22   
............GCTGGAGCACAAAAGCCGa.....................................................    read_12222_1_0_0_0_0_0        OTHER            1         9.09            1        14.29            0         0.00            a           18   
                                                                                                                              ----------                ----------                ----------   
                                                                                                                                      11                         7                         4                                          
                                                                                                                                                           (63.64)                   (36.36)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              11               8              19          63.33%
          OTHER               7               4              11          36.67%
                     ----------      ----------      ----------                
                             18              12              30                



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