[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************
ID : mmu-mir-1964
DESCRIPTION : mmu-mir-1964 MI0009961 Mus musculus miR-1964 stem-loop
CHROMOSOME : 7
SPAN : 30558313 - 30558395
LENGTH : 83
SEQUENCE : CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA
OVERHANG THRESHOLD : 75%
********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1964
ACCID : MI0009961
PARENT : mmu-mir-1964
CHROMOSOME : 7
START : 30558313
STOP : 30558395
OFFSET : 51..72
SEQUENCE : CCGACTTCTGGGCTCCGGCTTT
STRAND : +
******************************
*** MATURE ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF 7 30558313 - 30558395
CCGACTTCTGGGCTCCGGCTTT MATURE 7 30558364 - 30558467 mmu-miR-1964 +
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................CGACTTCTGGGCTCCGGCTTT............ read_401614_1_1_2_1_0_2 MATURE 7 36.84 4 36.36 3 37.50 21
...................................................CGACTTCTGGGCTCCGGCTT............. read_310136_1_0_0_1_2_1 MATURE 5 26.32 1 9.09 4 50.00 20
...................................................CGACTTCTGGGCTCCGGCTTTt........... read_123486_0_2_0_0_0_0 MATURE 2 10.53 2 18.18 0 0.00 t 21
...................................................CGACTTCTGGGCTCCGGCTTat........... read_49718_0_0_1_0_0_0 MATURE 1 5.26 1 9.09 0 0.00 at 20
...................................................CGACTTCTGGGCTCCGGCTTTGt.......... read_105471_1_0_0_0_0_0 MATURE 1 5.26 1 9.09 0 0.00 t 22
..................................................CCGACTTCTGGGCTCCGGCTT............. read_350161_1_0_0_0_0_0 MATURE 1 5.26 1 9.09 0 0.00 21
...................................................CGACTTCTGGGCTCCtGCTTT............ read_137051_0_1_0_0_0_0 MATURE 1 5.26 1 9.09 0 0.00 15T5
...................................................CGACTTCTGGGCTCCGGCTTTttt......... read_155308_0_0_0_0_0_1 MATURE 1 5.26 0 0.00 1 12.50 ttt 21
---------- ---------- ----------
19 11 8
(57.89) (42.11)
*** OTHER ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF 7 30558313 - 30558395
CCGACTTCTGGGCTCCGGCTTT MATURE 7 30558364 - 30558467 mmu-miR-1964 +
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............GCTGGAGCACAAAAGCCGGTGt.................................................. read_369779_0_0_2_0_0_1 OTHER 3 27.27 2 28.57 1 25.00 t 21
............GCTGGAGCACAAAAGCCGGT.................................................... read_149236_0_0_0_2_0_0 OTHER 2 18.18 0 0.00 2 50.00 20
............GCTGGAGCACAAAAGCCGGTGttt................................................ read_74237_0_0_0_0_0_1 OTHER 1 9.09 0 0.00 1 25.00 ttt 21
............GCTGGAGCACAAAAGCCGGTG................................................... read_105199_0_1_0_0_0_0 OTHER 1 9.09 1 14.29 0 0.00 21
............GCTGGAGCACAAAAGCCGGTGtt................................................. read_377570_1_0_0_0_0_0 OTHER 1 9.09 1 14.29 0 0.00 tt 21
............GCTGGAGCACAAAAGCCGGTGa.................................................. read_3330_0_1_0_0_0_0 OTHER 1 9.09 1 14.29 0 0.00 a 21
............GCTGGAGCACAAAAGCCGGTGC.................................................. read_121068_1_0_0_0_0_0 OTHER 1 9.09 1 14.29 0 0.00 22
............GCTGGAGCACAAAAGCCGa..................................................... read_12222_1_0_0_0_0_0 OTHER 1 9.09 1 14.29 0 0.00 a 18
---------- ---------- ----------
11 7 4
(63.64) (36.36)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 11 8 19 63.33%
OTHER 7 4 11 36.67%
---------- ---------- ----------
18 12 30
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