[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************
ID : mmu-mir-1960
DESCRIPTION : mmu-mir-1960 MI0009957 Mus musculus miR-1960 stem-loop
CHROMOSOME : 5
SPAN : 30497279 - 30497356
LENGTH : 78
SEQUENCE : CAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTG
OVERHANG THRESHOLD : 75%
***************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1960
ACCID : MI0009957
PARENT : mmu-mir-1960
CHROMOSOME : 5
START : 30497279
STOP : 30497356
OFFSET : 13..34
SEQUENCE : CCAGTGCTGTTAGAAGAGGGCT
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________
CAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTG REF 5 30497279 - 30497356
CCAGTGCTGTTAGAAGAGGGCT MATURE 5 30497292 - 30497390 mmu-miR-1960 +
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............CAGTGCTGTTAGAAGAGGGCT............................................. read_193055_0_1_0_0_0_0 MATURE 1 50.00 1 100.00 0 0.00 21
.............CAGTGCTGTTAGAAGAGGGCTt............................................ read_97767_0_0_0_1_0_0 MATURE 1 50.00 0 0.00 1 100.00 t 21
---------- ---------- ----------
2 1 1
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 1 2 100.00%
---------- ---------- ----------
1 1 2
[END]