[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************************
ID                 : mmu-mir-195
DESCRIPTION        : mmu-mir-195 MI0000237 Mus musculus miR-195 stem-loop
CHROMOSOME         : 11
SPAN               : 70048544 - 70048637
LENGTH             : 94
SEQUENCE           : ACACCCAACTCTCCTGGCTCTAGCAGCACAGAAATATTGGCATGGGGAAGTGAGTCTGCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGTGA
OVERHANG THRESHOLD : 75%
*******************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-195
ACCID      : MI0000237
PARENT     : mmu-mir-195
CHROMOSOME : 11
START      : 70048544
STOP       : 70048637
OFFSET     : 21..41
SEQUENCE   : TAGCAGCACAGAAATATTGGC
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________________
ACACCCAACTCTCCTGGCTCTAGCAGCACAGAAATATTGGCATGGGGAAGTGAGTCTGCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGTGA REF                  11                   70048544 - 70048637  
                    TAGCAGCACAGAAATATTGGC                                                      MATURE               11                   70048565 - 70048678  mmu-miR-195          +                    
______________________________________________________________________________________________

                                                                                          -SEQ-                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................AGCAGCACAGAAATATTGGCA.....................................................   read_355158_24_26_27_4_8_15       MATURE          104        42.28           77        40.74           27        47.37                        21   
.....................AGCAGCACAGAAATATTGGCAT....................................................     read_294929_13_9_15_2_2_2       MATURE           43        17.48           37        19.58            6        10.53                        22   
.....................AGCAGCACAGAAATATTGGCAa....................................................      read_166000_6_7_11_1_3_3       MATURE           31        12.60           24        12.70            7        12.28            a           21   
.....................AGCAGCACAGAAATATTGGC......................................................       read_173373_3_8_9_4_2_0       MATURE           26        10.57           20        10.58            6        10.53                        20   
.....................AGCAGCACAGAAATATTGG.......................................................       read_381838_0_5_0_0_0_1       MATURE            6         2.44            5         2.65            1         1.75                        19   
.....................AGCAGCACAGAAATATTGGa......................................................       read_390612_0_2_1_0_1_0       MATURE            4         1.63            3         1.59            1         1.75            a           19   
.....................AGCAGCACAGAAATATTG........................................................       read_346351_0_0_0_1_1_1       MATURE            3         1.22            0         0.00            3         5.26                        18   
.....................AGCtGCACAGAAATATTGGCAT....................................................        read_80418_0_2_0_0_0_0       MATURE            2         0.81            2         1.06            0         0.00                      3T18   
.....................AGCAGCACAtAAATATTGGCA.....................................................        read_26577_1_1_0_0_0_0       MATURE            2         0.81            2         1.06            0         0.00                      9T11   
.....................AGCAGCACAGAAATATTGGCt.....................................................       read_328466_1_1_0_0_0_0       MATURE            2         0.81            2         1.06            0         0.00            t           20   
.....................AGCAGCACAGAAATATTGGCAaa...................................................       read_283096_1_0_0_0_0_1       MATURE            2         0.81            1         0.53            1         1.75           aa           21   
.....................AGCAGCACgGAAATATTGGC......................................................       read_312358_0_0_0_0_1_1       MATURE            2         0.81            0         0.00            2         3.51                      8G11   
.....................AGCAGCACgGAAATATTGGCA.....................................................        read_59286_0_1_0_0_0_1       MATURE            2         0.81            1         0.53            1         1.75                      8G12   
.....................AGCAGCACAGAAATATTGGaa.....................................................       read_204743_1_0_0_0_0_1       MATURE            2         0.81            1         0.53            1         1.75           aa           19   
.....................AGCAGCACAGAAATATTGa.......................................................        read_55652_0_0_1_0_0_0       MATURE            1         0.41            1         0.53            0         0.00            a           18   
.....................AGCAGCACAGAAATATTGGCgt....................................................       read_193974_1_0_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00           gt           20   
.....................AGCAGCACAGAAATATT.........................................................       read_328111_0_1_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00                        17   
.....................AGCAGCACAGAAATATTGGta.....................................................        read_87268_0_1_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00           ta           19   
.....................AGCAGCACAGAAATATTGGCAat...................................................        read_15409_0_0_1_0_0_0       MATURE            1         0.41            1         0.53            0         0.00           at           21   
.........................GCACAGAAATATTGGCA.....................................................        read_40148_0_1_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00                        17   
.....................AGCAGCACAGAAATcTTGGCAT....................................................        read_93450_1_0_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00                      14C7   
.....................AGCAGCACAGAAATATTGGCAagt..................................................       read_191683_0_0_1_0_0_0       MATURE            1         0.41            1         0.53            0         0.00          agt           21   
.....................AGCAGCACAGAAATATTGGaaa....................................................       read_363115_1_0_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00          aaa           19   
.....................AGCAGCACAGAAATgTTGGCAa....................................................       read_131396_1_0_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00            a         14G6   
.....................AGCAGCACAGAAATgTTGGCA.....................................................       read_131506_1_0_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00                      14G6   
.....................AGCAGCACAGAAAgATTGGCA.....................................................       read_186744_0_1_0_0_0_0       MATURE            1         0.41            1         0.53            0         0.00                      13G7   
.....................AGCAGCACAGAAATATTGGCATt...................................................       read_324935_0_0_1_0_0_0       MATURE            1         0.41            1         0.53            0         0.00            t           22   
.....................AGCAGCACAtAAATATTGGC......................................................       read_113437_0_0_0_0_1_0       MATURE            1         0.41            0         0.00            1         1.75                      9T10   
.....................AGCAGCACAGAAATATTGGCAct...................................................       read_130809_0_0_1_0_0_0       MATURE            1         0.41            1         0.53            0         0.00           ct           21   
                                                                                                                                             ----------                ----------                ----------   
                                                                                                                                                    246                       189                        57                                          
                                                                                                                                                                          (76.83)                   (23.17)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             189              57             246         100.00%
                     ----------      ----------      ----------                
                            189              57             246                



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