[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************
ID : mmu-mir-1948
DESCRIPTION : mmu-mir-1948 MI0009939 Mus musculus miR-1948 stem-loop
CHROMOSOME : 18
SPAN : 12873320 - 12873404
LENGTH : 85
SEQUENCE : ATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAAT
OVERHANG THRESHOLD : 75%
**********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1948
ACCID : MI0009939
PARENT : mmu-mir-1948
CHROMOSOME : 18
START : 12873320
STOP : 12873404
OFFSET : 52..73
SEQUENCE : TTTAGGCAGAGCACTCGTACAG
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________________
ATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAAT REF 18 12873320 - 12873404
TTTAGGCAGAGCACTCGTACAG MATURE 18 12873372 - 12873477 mmu-miR-1948 +
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................................................TTAGGCAGAGCACTCGTACAG............. read_97307_0_1_1_0_0_0 MATURE 2 28.57 2 40.00 0 0.00 21
....................................................TTAGGCAGAGCACTCGTACAGTt........... read_147819_0_1_0_0_0_0 MATURE 1 14.29 1 20.00 0 0.00 t 22
....................................................TTAGGCAGAGCACTCGTACAGT............ read_44948_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 50.00 22
....................................................TTAGGCAGAGCACTCGTACA.............. read_174684_0_0_1_0_0_0 MATURE 1 14.29 1 20.00 0 0.00 20
....................................................TTAGGCAGAGCACTCGT................. read_177933_0_0_1_0_0_0 MATURE 1 14.29 1 20.00 0 0.00 17
.....................................................TAGGCAGAGCACTCGTAC............... read_218669_0_0_0_0_1_0 MATURE 1 14.29 0 0.00 1 50.00 18
---------- ---------- ----------
7 5 2
(71.43) (28.57)
*** OTHER ***
_____________________________________________________________________________________
ATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAAT REF 18 12873320 - 12873404
TTTAGGCAGAGCACTCGTACAG MATURE 18 12873372 - 12873477 mmu-miR-1948 +
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................ATGAGTATTCTGCCTAAATGT................................................. read_323754_0_1_1_2_1_0 OTHER 5 100.00 2 100.00 3 100.00 21
---------- ---------- ----------
5 2 3
(40.00) (60.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 5 2 7 58.33%
OTHER 2 3 5 41.67%
---------- ---------- ----------
7 5 12
[END]