[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************
ID : mmu-mir-1944
DESCRIPTION : mmu-mir-1944 MI0009933 Mus musculus miR-1944 stem-loop
CHROMOSOME : 15
SPAN : 79913281 - 79913354
LENGTH : 74
SEQUENCE : AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA
OVERHANG THRESHOLD : 75%
***********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1944
ACCID : MI0009933
PARENT : mmu-mir-1944
CHROMOSOME : 15
START : 79913281
STOP : 79913354
OFFSET : 40..66
SEQUENCE : CTCTGTGCTGAATGTCAAGTTCTGATT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF 15 79913281 - 79913354
CTCTGTGCTGAATGTCAAGTTCTGATT MATURE 15 79913321 - 79913420 mmu-miR-1944 -
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................AGAAACTCTGTGCTGAATGTC.................... read_236477_0_0_0_0_2_0 MATURE 2 28.57 0 0.00 2 33.33 21
........................................TCTGTGCTGAATGTCAAGTTC.............. read_197421_0_0_0_0_1_0 MATURE 1 14.29 0 0.00 1 16.67 21
........................................TCTGTGCTGAATGTCAAGTTCTGATT......... read_386422_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 16.67 26
.................................................AATGTCAAGTTCTGATT......... read_47693_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 16.67 17
......................................ACTCTGTGCTGAATGTCAAGTTa.............. read_198341_0_1_0_0_0_0 MATURE 1 14.29 1 100.00 0 0.00 a 22
..............................................CTGAATGTCAAGTTCTGATT......... read_326581_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 16.67 20
---------- ---------- ----------
7 1 6
(14.29) (85.71)
*** OTHER ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF 15 79913281 - 79913354
CTCTGTGCTGAATGTCAAGTTCTGATT MATURE 15 79913321 - 79913420 mmu-miR-1944 -
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......CAAATGATGAACCTTTTGACGG............................................... read_280273_3_0_2_0_1_1 OTHER 7 14.00 5 17.24 2 9.52 22
......CAAATGATGAACCTTTTGACG................................................ read_363695_1_2_2_1_0_1 OTHER 7 14.00 5 17.24 2 9.52 21
......CAAATGATGAACCTTTTG................................................... read_105150_1_1_1_0_1_0 OTHER 4 8.00 3 10.34 1 4.76 18
.....ACAAATGATGAACCTTTTGACG................................................ read_270493_0_1_1_0_0_2 OTHER 4 8.00 2 6.90 2 9.52 22
......CAAATGATGAACCTTTT.................................................... read_359162_1_0_0_1_1_1 OTHER 4 8.00 1 3.45 3 14.29 17
.....ACAAATGATGAACCTTTTGACGG............................................... read_295478_1_1_1_0_0_1 OTHER 4 8.00 3 10.34 1 4.76 23
.....ACAAATGATGAACCTTTTG................................................... read_95762_1_0_0_0_2_0 OTHER 3 6.00 1 3.45 2 9.52 19
......CAAATGATGAACCTTTTGACGGGC............................................. read_269837_0_0_0_0_3_0 OTHER 3 6.00 0 0.00 3 14.29 24
......CAAATGATGAACCTTTTGACGGaa............................................. read_175552_1_1_1_0_0_0 OTHER 3 6.00 3 10.34 0 0.00 aa 22
.....ACAAATGATGAACaTTTTGACG................................................ read_200129_0_0_0_0_0_2 OTHER 2 4.00 0 0.00 2 9.52 13A8
......CAAATGATGAACCTTTTtACGG............................................... read_357737_0_0_0_1_0_0 OTHER 1 2.00 0 0.00 1 4.76 17T4
......CAAATGATGAACCTTTTGAa................................................. read_322883_0_0_1_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 a 19
.....ACAAATGATGAACCTTTT.................................................... read_302425_0_0_1_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 18
......CAAATGATGAACCTTTTGAaa................................................ read_97292_0_0_1_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 aa 19
.....ACAAATGATGAACCTTTTGACGGa.............................................. read_72480_0_1_0_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 a 23
.....ACAAATGATGAACCTTT..................................................... read_280632_0_0_1_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 17
......CAAATGATGAACCTTTTGACGGaaa............................................ read_26337_0_0_0_1_0_0 OTHER 1 2.00 0 0.00 1 4.76 aaa 22
......CAAATGATGAACCTTTTGACGGa.............................................. read_306306_1_0_0_0_0_0 OTHER 1 2.00 1 3.45 0 0.00 a 22
.....ACAAATGATGAACCTTTTGACaa............................................... read_194018_0_0_0_0_1_0 OTHER 1 2.00 0 0.00 1 4.76 aa 21
---------- ---------- ----------
50 29 21
(58.00) (42.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 6 7 12.28%
OTHER 29 21 50 87.72%
---------- ---------- ----------
30 27 57
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