[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************
ID                 : mmu-mir-194-2
DESCRIPTION        : mmu-mir-194-2 MI0000733 Mus musculus miR-194-2 stem-loop
CHROMOSOME         : 19
SPAN               : 6264643 - 6264728
LENGTH             : 86
SEQUENCE           : GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG
OVERHANG THRESHOLD : 75%
***********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-194
ACCID      : MI0000733
PARENT     : mmu-mir-194-2
CHROMOSOME : 19
START      : 6264643
STOP       : 6264728
OFFSET     : 16..37
SEQUENCE   : TGTAACAGCAACTCCATGTGGA
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________
GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG REF                  19                   6264643 - 6264728    
               TGTAACAGCAACTCCATGTGGA                                                  MATURE               19                   6264659 - 6264765    mmu-miR-194          +                    
______________________________________________________________________________________

                                                                                  -SEQ-                         -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................GTAACAGCAACTCCATGTGGA..................................................   read_165687_52_57_54_12_11_8       MATURE          194        39.03          163        42.12           31        28.18                        21   
................GTAACAGCAACTCCATGTGGAA.................................................   read_259651_29_54_37_9_10_17       MATURE          156        31.39          120        31.01           36        32.73                        22   
................GTAACAGCAACTCCATGTGGAAt................................................          read_4894_6_7_5_0_2_5       MATURE           25         5.03           18         4.65            7         6.36            t           22   
................GTAACAGCAACTCCATGTGGAAa................................................         read_11544_3_9_5_3_4_1       MATURE           25         5.03           17         4.39            8         7.27            a           22   
................GTAACAGCAACTCCATGTGGAt.................................................        read_241702_4_8_5_1_1_0       MATURE           19         3.82           17         4.39            2         1.82            t           21   
....................CAGCAACTCCATGTGGAA.................................................        read_154109_2_0_0_6_3_4       MATURE           15         3.02            2         0.52           13        11.82                        18   
................GTAACAGCAACTCCATGTGG...................................................        read_187572_1_6_3_0_1_2       MATURE           13         2.62           10         2.58            3         2.73                        20   
....................CAGCAACTCCATGTGGA..................................................        read_221171_0_2_0_1_1_0       MATURE            4         0.80            2         0.52            2         1.82                        17   
................GTAACAGCAACTCCATGTGt...................................................         read_51054_1_1_0_0_1_0       MATURE            3         0.60            2         0.52            1         0.91            t           19   
................GTAACAGCAACTCCATGTGGt..................................................        read_158922_0_1_1_0_0_0       MATURE            2         0.40            2         0.52            0         0.00            t           20   
................GTAACAGCAACTCCATGTGGg..................................................        read_186721_1_1_0_0_0_0       MATURE            2         0.40            2         0.52            0         0.00            g           20   
................GTAACAGCAACTCCATGTGGc..................................................        read_216234_0_2_0_0_0_0       MATURE            2         0.40            2         0.52            0         0.00            c           20   
................GTAACAGCAACTCCcTGTGGA..................................................        read_209395_2_0_0_0_0_0       MATURE            2         0.40            2         0.52            0         0.00                      14C6   
................GTAgCAGCAACTCCATGTGGA..................................................         read_79191_1_1_0_0_0_0       MATURE            2         0.40            2         0.52            0         0.00                      3G17   
................GTAACAGCAACTCCATGTGaa..................................................        read_318145_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00           aa           19   
................GTAACAGCAACTCCATGTGtAAt................................................        read_317130_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            t         19T2   
................GTAACAGCAACTCCATGTtGAA.................................................        read_208840_0_0_0_0_1_0       MATURE            1         0.20            0         0.00            1         0.91                      18T3   
................GTAACAGCAACTCCATGTGGca.................................................        read_197670_0_0_0_0_1_0       MATURE            1         0.20            0         0.00            1         0.91           ca           20   
................GTAACAGCAACTCCATGTGGtat................................................         read_95355_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00          tat           20   
................GTAACAGCAACTCCATGTGcAA.................................................         read_25874_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      19C2   
................GTAACAGCAACTCCATGTGGta.................................................        read_375246_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00           ta           20   
................GTAACAGCAACTCCATGTGGAtt................................................         read_63265_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.91           tt           21   
................GTAACAGCAACTCCtTGTGGAA.................................................        read_106090_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      14T7   
................GTAACAGCAACcCCATGTGGAA.................................................         read_40512_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                     11C10   
................GTAACAGCAACTCCgTGTGGAAa................................................        read_252120_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            a         14G7   
................GTAACAGCAACTaCATGTGGA..................................................        read_268935_0_0_0_0_1_0       MATURE            1         0.20            0         0.00            1         0.91                      12A8   
................GTAACAGCAACTCCATaTGGA..................................................        read_240872_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      16A4   
................GTAACAGCAACTCCcTGTGGAA.................................................        read_333374_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      14C7   
................GTAACAGCAACTCCATcTGGA..................................................        read_154690_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      16C4   
................GTAACAGCAACTCCATGTG....................................................        read_266243_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                        19   
................GTAACAGCAACTCCgTGTGGAAt................................................         read_93524_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            t         14G7   
................GTAACAGCAACTCCtTGTGGAAt................................................         read_99000_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            t         14T7   
................GTAACAGCAgCTCCATGTGGAAa................................................        read_295725_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            a         9G12   
................GTAACAGCAACTCCATGTGGtaa................................................        read_164876_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00          taa           20   
................GTAACAGCAACTCCATaTGGAA.................................................        read_334691_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.91                      16A5   
................GTAACAGCAACTCaATGTGGAA.................................................         read_34640_0_0_0_0_1_0       MATURE            1         0.20            0         0.00            1         0.91                      13A8   
................GTAACAGCAACTCCATGTGGAca................................................        read_180030_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00           ca           21   
................GTAACAGCAACTCCATtTGGA..................................................        read_365949_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      16T4   
................GTAACAGCAACTCCATGT.....................................................        read_121012_0_0_0_0_1_0       MATURE            1         0.20            0         0.00            1         0.91                        18   
................GTAACAaCAACTCCATGTGGAA.................................................        read_393213_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      6A15   
................GTAACAGCAACTCCATGTGGtt.................................................        read_265232_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00           tt           20   
................GTAACAGCAACTCCATGTGGAAaag..............................................         read_70075_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00          aag           22   
................GTAACAGCAACTCCATGTGGAAG................................................        read_363702_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                        23   
................GTAACAGCAACTCCATGTGtAA.................................................        read_225655_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00                      19T2   
................GTAACAGCAACTCCATGTGa...................................................        read_115985_0_1_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            a           19   
................GTAACAGCAACTCCcTGTGGAAa................................................        read_371197_0_0_1_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            a         14C7   
................GTAACAGCAACTCCgTGTGGAt.................................................        read_116335_1_0_0_0_0_0       MATURE            1         0.20            1         0.26            0         0.00            t         14G6   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                             497                       387                       110                                          
                                                                                                                                                                   (77.87)                   (22.13)                                       




*** OTHER ***
______________________________________________________________________________________
GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG REF                  19                   6264643 - 6264728    
               TGTAACAGCAACTCCATGTGGA                                                  MATURE               19                   6264659 - 6264765    mmu-miR-194          +                    
______________________________________________________________________________________

                                                                                  -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................................................CAGTGGGGCTGCTGTTATCTG..............   read_388120_0_1_0_0_0_0        OTHER            1       100.00            1       100.00            0            0                        21   
                                                                                                                                 ----------                ----------                ----------   
                                                                                                                                          1                         1                         0                                          
                                                                                                                                                             (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             387             110             497          99.80%
          OTHER               1               0               1           0.20%
                     ----------      ----------      ----------                
                            388             110             498                



[END]
