[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************
ID : mmu-mir-194-2
DESCRIPTION : mmu-mir-194-2 MI0000733 Mus musculus miR-194-2 stem-loop
CHROMOSOME : 19
SPAN : 6264643 - 6264728
LENGTH : 86
SEQUENCE : GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG
OVERHANG THRESHOLD : 75%
***********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-194
ACCID : MI0000733
PARENT : mmu-mir-194-2
CHROMOSOME : 19
START : 6264643
STOP : 6264728
OFFSET : 16..37
SEQUENCE : TGTAACAGCAACTCCATGTGGA
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________
GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG REF 19 6264643 - 6264728
TGTAACAGCAACTCCATGTGGA MATURE 19 6264659 - 6264765 mmu-miR-194 +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................GTAACAGCAACTCCATGTGGA.................................................. read_165687_52_57_54_12_11_8 MATURE 194 39.03 163 42.12 31 28.18 21
................GTAACAGCAACTCCATGTGGAA................................................. read_259651_29_54_37_9_10_17 MATURE 156 31.39 120 31.01 36 32.73 22
................GTAACAGCAACTCCATGTGGAAt................................................ read_4894_6_7_5_0_2_5 MATURE 25 5.03 18 4.65 7 6.36 t 22
................GTAACAGCAACTCCATGTGGAAa................................................ read_11544_3_9_5_3_4_1 MATURE 25 5.03 17 4.39 8 7.27 a 22
................GTAACAGCAACTCCATGTGGAt................................................. read_241702_4_8_5_1_1_0 MATURE 19 3.82 17 4.39 2 1.82 t 21
....................CAGCAACTCCATGTGGAA................................................. read_154109_2_0_0_6_3_4 MATURE 15 3.02 2 0.52 13 11.82 18
................GTAACAGCAACTCCATGTGG................................................... read_187572_1_6_3_0_1_2 MATURE 13 2.62 10 2.58 3 2.73 20
....................CAGCAACTCCATGTGGA.................................................. read_221171_0_2_0_1_1_0 MATURE 4 0.80 2 0.52 2 1.82 17
................GTAACAGCAACTCCATGTGt................................................... read_51054_1_1_0_0_1_0 MATURE 3 0.60 2 0.52 1 0.91 t 19
................GTAACAGCAACTCCATGTGGt.................................................. read_158922_0_1_1_0_0_0 MATURE 2 0.40 2 0.52 0 0.00 t 20
................GTAACAGCAACTCCATGTGGg.................................................. read_186721_1_1_0_0_0_0 MATURE 2 0.40 2 0.52 0 0.00 g 20
................GTAACAGCAACTCCATGTGGc.................................................. read_216234_0_2_0_0_0_0 MATURE 2 0.40 2 0.52 0 0.00 c 20
................GTAACAGCAACTCCcTGTGGA.................................................. read_209395_2_0_0_0_0_0 MATURE 2 0.40 2 0.52 0 0.00 14C6
................GTAgCAGCAACTCCATGTGGA.................................................. read_79191_1_1_0_0_0_0 MATURE 2 0.40 2 0.52 0 0.00 3G17
................GTAACAGCAACTCCATGTGaa.................................................. read_318145_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 aa 19
................GTAACAGCAACTCCATGTGtAAt................................................ read_317130_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 t 19T2
................GTAACAGCAACTCCATGTtGAA................................................. read_208840_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.91 18T3
................GTAACAGCAACTCCATGTGGca................................................. read_197670_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.91 ca 20
................GTAACAGCAACTCCATGTGGtat................................................ read_95355_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 tat 20
................GTAACAGCAACTCCATGTGcAA................................................. read_25874_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 19C2
................GTAACAGCAACTCCATGTGGta................................................. read_375246_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 ta 20
................GTAACAGCAACTCCATGTGGAtt................................................ read_63265_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.91 tt 21
................GTAACAGCAACTCCtTGTGGAA................................................. read_106090_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 14T7
................GTAACAGCAACcCCATGTGGAA................................................. read_40512_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 11C10
................GTAACAGCAACTCCgTGTGGAAa................................................ read_252120_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 a 14G7
................GTAACAGCAACTaCATGTGGA.................................................. read_268935_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.91 12A8
................GTAACAGCAACTCCATaTGGA.................................................. read_240872_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 16A4
................GTAACAGCAACTCCcTGTGGAA................................................. read_333374_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 14C7
................GTAACAGCAACTCCATcTGGA.................................................. read_154690_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 16C4
................GTAACAGCAACTCCATGTG.................................................... read_266243_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 19
................GTAACAGCAACTCCgTGTGGAAt................................................ read_93524_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 t 14G7
................GTAACAGCAACTCCtTGTGGAAt................................................ read_99000_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 t 14T7
................GTAACAGCAgCTCCATGTGGAAa................................................ read_295725_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 a 9G12
................GTAACAGCAACTCCATGTGGtaa................................................ read_164876_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 taa 20
................GTAACAGCAACTCCATaTGGAA................................................. read_334691_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.91 16A5
................GTAACAGCAACTCaATGTGGAA................................................. read_34640_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.91 13A8
................GTAACAGCAACTCCATGTGGAca................................................ read_180030_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 ca 21
................GTAACAGCAACTCCATtTGGA.................................................. read_365949_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 16T4
................GTAACAGCAACTCCATGT..................................................... read_121012_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.91 18
................GTAACAaCAACTCCATGTGGAA................................................. read_393213_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 6A15
................GTAACAGCAACTCCATGTGGtt................................................. read_265232_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 tt 20
................GTAACAGCAACTCCATGTGGAAaag.............................................. read_70075_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 aag 22
................GTAACAGCAACTCCATGTGGAAG................................................ read_363702_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 23
................GTAACAGCAACTCCATGTGtAA................................................. read_225655_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 19T2
................GTAACAGCAACTCCATGTGa................................................... read_115985_0_1_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 a 19
................GTAACAGCAACTCCcTGTGGAAa................................................ read_371197_0_0_1_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 a 14C7
................GTAACAGCAACTCCgTGTGGAt................................................. read_116335_1_0_0_0_0_0 MATURE 1 0.20 1 0.26 0 0.00 t 14G6
---------- ---------- ----------
497 387 110
(77.87) (22.13)
*** OTHER ***
______________________________________________________________________________________
GTGGCTCCCACCCTCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGGTTCCAGTGGGGCTGCTGTTATCTGGGGTGGCGGCTAG REF 19 6264643 - 6264728
TGTAACAGCAACTCCATGTGGA MATURE 19 6264659 - 6264765 mmu-miR-194 +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................................................CAGTGGGGCTGCTGTTATCTG.............. read_388120_0_1_0_0_0_0 OTHER 1 100.00 1 100.00 0 0 21
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 387 110 497 99.80%
OTHER 1 0 1 0.20%
---------- ---------- ----------
388 110 498
[END]