[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************
ID : mmu-mir-194-1
DESCRIPTION : mmu-mir-194-1 MI0000236 Mus musculus miR-194-1 stem-loop
CHROMOSOME : 1
SPAN : 187137198 - 187137264
LENGTH : 67
SEQUENCE : ATCGGGTGTAACAGCAACTCCATGTGGACTGTGCTCGGATTCCAGTGGAGCTGCTGTTACTTCTGAT
OVERHANG THRESHOLD : 75%
****************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-194
ACCID : MI0000236
PARENT : mmu-mir-194-1
CHROMOSOME : 1
START : 187137198
STOP : 187137264
OFFSET : 7..28
SEQUENCE : TGTAACAGCAACTCCATGTGGA
STRAND : +
******************************
*** MATURE ***
___________________________________________________________________
ATCGGGTGTAACAGCAACTCCATGTGGACTGTGCTCGGATTCCAGTGGAGCTGCTGTTACTTCTGAT REF 1 187137198 - 187137264
TGTAACAGCAACTCCATGTGGA MATURE 1 187137205 - 187137292 mmu-miR-194 +
___________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......GTAACAGCAACTCCATGTGGA........................................ read_165687_52_57_54_12_11_8 MATURE 194 62.78 163 64.94 31 53.45 21
.......GTAACAGCAACTCCATGTGGAaa...................................... read_11544_3_9_5_3_4_1 MATURE 25 8.09 17 6.77 8 13.79 aa 21
.......GTAACAGCAACTCCATGTGGAat...................................... read_4894_6_7_5_0_2_5 MATURE 25 8.09 18 7.17 7 12.07 at 21
.......GTAACAGCAACTCCATGTGGAt....................................... read_241702_4_8_5_1_1_0 MATURE 19 6.15 17 6.77 2 3.45 t 21
.......GTAACAGCAACTCCATGTGG......................................... read_187572_1_6_3_0_1_2 MATURE 13 4.21 10 3.98 3 5.17 20
...........CAGCAACTCCATGTGGA........................................ read_221171_0_2_0_1_1_0 MATURE 4 1.29 2 0.80 2 3.45 17
.......GTAACAGCAACTCCATGTGt......................................... read_51054_1_1_0_0_1_0 MATURE 3 0.97 2 0.80 1 1.72 t 19
.......GTAACAGCAACTCCATGTGGc........................................ read_216234_0_2_0_0_0_0 MATURE 2 0.65 2 0.80 0 0.00 c 20
.......GTAACAGCAACTCCATGTGGt........................................ read_158922_0_1_1_0_0_0 MATURE 2 0.65 2 0.80 0 0.00 t 20
.......GTAACAGCAACTCCATGTGGg........................................ read_186721_1_1_0_0_0_0 MATURE 2 0.65 2 0.80 0 0.00 g 20
.......GTAgCAGCAACTCCATGTGGA........................................ read_79191_1_1_0_0_0_0 MATURE 2 0.65 2 0.80 0 0.00 3G17
.......GTAACAGCAACTCCcTGTGGA........................................ read_209395_2_0_0_0_0_0 MATURE 2 0.65 2 0.80 0 0.00 14C6
.......GTAACAGCAACTCCATGTGGtat...................................... read_95355_0_1_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 tat 20
.......GTAACAGCAACTCCATGTGGAtt...................................... read_63265_0_0_0_0_0_1 MATURE 1 0.32 0 0.00 1 1.72 tt 21
.......GTAACAGCAACTCCATGTGaa........................................ read_318145_1_0_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 aa 19
.......GTAACAGCAACTCCATGTGGca....................................... read_197670_0_0_0_0_1_0 MATURE 1 0.32 0 0.00 1 1.72 ca 20
.......GTAACAGCAACTaCATGTGGA........................................ read_268935_0_0_0_0_1_0 MATURE 1 0.32 0 0.00 1 1.72 12A8
.......GTAACAGCAACTCCATGTGGtaa...................................... read_164876_0_0_1_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 taa 20
.......GTAACAGCAACTCCATGTGGACa...................................... read_180030_0_1_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 a 22
.......GTAACAGCAACTCCATaTGGA........................................ read_240872_0_0_1_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 16A4
.......GTAACAGCAACTCCATtTGGA........................................ read_365949_1_0_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 16T4
.......GTAACAGCAACTCCATcTGGA........................................ read_154690_1_0_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 16C4
.......GTAACAGCAACTCCATGTGGta....................................... read_375246_0_0_1_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 ta 20
.......GTAACAGCAACTCCATGTGGtt....................................... read_265232_0_0_1_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 tt 20
.......GTAACAGCAACTCCATGTGa......................................... read_115985_0_1_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 a 19
.......GTAACAGCAACTCCATGTG.......................................... read_266243_1_0_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 19
.......GTAACAGCAACTCCgTGTGGAt....................................... read_116335_1_0_0_0_0_0 MATURE 1 0.32 1 0.40 0 0.00 t 14G6
.......GTAACAGCAACTCCATGT........................................... read_121012_0_0_0_0_1_0 MATURE 1 0.32 0 0.00 1 1.72 18
---------- ---------- ----------
309 251 58
(81.23) (18.77)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 251 58 309 100.00%
---------- ---------- ----------
251 58 309
[END]