[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-18b
DESCRIPTION        : mmu-mir-18b MI0005483 Mus musculus miR-18b stem-loop
CHROMOSOME         : X
SPAN               : 50095508 - 50095590
LENGTH             : 83
SEQUENCE           : TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA
OVERHANG THRESHOLD : 75%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-18b
ACCID      : MI0005483
PARENT     : mmu-mir-18b
CHROMOSOME : X
START      : 50095508
STOP       : 50095590
OFFSET     : 11..33
SEQUENCE   : TAAGGTGCATCTAGTGCTGTTAG
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF                  X                    50095508 - 50095590  
          TAAGGTGCATCTAGTGCTGTTAG                                                   MATURE               X                    50095519 - 50095623  mmu-miR-18b          -                    
___________________________________________________________________________________

                                                                               -SEQ-                      -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........AAGGTGCATCTAGTGCTGTTAG...................................................   read_300662_2_2_2_3_11_12       MATURE           32        30.48            6        12.00           26        47.27                        22   
...........AAGGTGCATCTAGTGCTGTTA....................................................       read_3907_7_4_6_2_3_1       MATURE           23        21.90           17        34.00            6        10.91                        21   
...........AAGGTGCATCTAGTGCTGTT.....................................................     read_182815_3_5_2_0_0_1       MATURE           11        10.48           10        20.00            1         1.82                        20   
...........AAGGTGCATCTAGTGCTGTTAt...................................................     read_340064_2_2_1_0_1_0       MATURE            6         5.71            5        10.00            1         1.82            t           21   
...........AAGGTGCATCTAGTGCaGTT.....................................................     read_343524_0_0_3_0_0_1       MATURE            4         3.81            3         6.00            1         1.82                      16A3   
...........AAGGTGCATCTAGTGCTGT......................................................     read_294136_0_1_0_2_0_1       MATURE            4         3.81            1         2.00            3         5.45                        19   
...........AAGGTGCATCTAGTGCTGTTAa...................................................     read_283178_0_0_1_2_0_0       MATURE            3         2.86            1         2.00            2         3.64            a           21   
...........AAGGTGCATCTAGTGCT........................................................     read_300304_0_0_0_0_1_1       MATURE            2         1.90            0         0.00            2         3.64                        17   
...........AAGGTGCATCTAGTGCTG.......................................................      read_21508_0_0_1_1_0_0       MATURE            2         1.90            1         2.00            1         1.82                        18   
...........AAGGTGCATCTAGTGCTGTTt....................................................     read_334815_0_0_1_0_0_1       MATURE            2         1.90            1         2.00            1         1.82            t           20   
...........AAGGTGCATCTAGTGtTGTT.....................................................     read_287189_0_1_0_0_0_0       MATURE            1         0.95            1         2.00            0         0.00                      15T4   
...........AAGGTGCATCTAGTGCTGTTg....................................................     read_283511_0_0_1_0_0_0       MATURE            1         0.95            1         2.00            0         0.00            g           20   
...........AAGGTGCATCTAGTGCTGTTAGa..................................................     read_409672_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82            a           22   
...........AAGGTGCATCTAGTGCTGTTtt...................................................     read_104995_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.82           tt           20   
...........AAGGTGCATCTAGTGCTGaTA....................................................      read_18005_0_0_1_0_0_0       MATURE            1         0.95            1         2.00            0         0.00                      18A2   
...........AAGGTGCATCTAGTGCTGcTA....................................................      read_81868_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.82                      18C2   
...........AAGGTGCATCTAGTGCaGTTA....................................................     read_266798_0_0_1_0_0_0       MATURE            1         0.95            1         2.00            0         0.00                      16A4   
...........AAGGTGCATCTgGTGCTGTTAG...................................................      read_68550_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82                     11G10   
...........AAGGTGCATCTAGTGCTGa......................................................      read_15715_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         1.82            a           18   
...........AAGGcGCATCTAGTGCTGTTAG...................................................      read_75190_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82                      4C17   
...........AAGGTGaATCTAGTGCTGTTA....................................................     read_173558_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.82                      6A14   
...........AAGGTGCATCTAGTGCTGTTtg...................................................     read_116439_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82           tg           20   
...........AAGGTGCATCTAGTGCTcTTAG...................................................     read_257817_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82                      17C4   
...........AAGGTGCATCTAGTGCTGTaa....................................................     read_283462_0_0_1_0_0_0       MATURE            1         0.95            1         2.00            0         0.00           aa           19   
...........AAGGTGCATCTAGTGCTtTTAG...................................................     read_124241_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.82                      17T4   
...........AAGGTGCATCTAGTGCaGTTAG...................................................      read_15595_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.82                      16A5   
                                                                                                                                ----------                ----------                ----------   
                                                                                                                                       105                        50                        55                                          
                                                                                                                                                             (47.62)                   (52.38)                                       




*** OTHER ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF                  X                    50095508 - 50095590  
          TAAGGTGCATCTAGTGCTGTTAG                                                   MATURE               X                    50095519 - 50095623  mmu-miR-18b          -                    
___________________________________________________________________________________

                                                                               -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ACTGCCCTAAATGCCCCTTCT............   read_276554_0_1_0_0_1_0        OTHER            2        40.00            1       100.00            1        25.00                        21   
....................................................CTGCCCTAAATGCCCCTTCTCG..........    read_72478_0_0_0_1_1_0        OTHER            2        40.00            0         0.00            2        50.00                        22   
...................................................ACTGCCCTAAATGCCCCTTCTCG..........   read_284145_0_0_0_1_0_0        OTHER            1        20.00            0         0.00            1        25.00                        23   
                                                                                                                              ----------                ----------                ----------   
                                                                                                                                       5                         1                         4                                          
                                                                                                                                                           (20.00)                   (80.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              50              55             105          95.45%
          OTHER               1               4               5           4.55%
                     ----------      ----------      ----------                
                             51              59             110                



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