[BEGIN]

REFERENCE HAIRPIN
*****************************************************************************************
ID                 : mmu-mir-188
DESCRIPTION        : mmu-mir-188 MI0000230 Mus musculus miR-188 stem-loop
CHROMOSOME         : X
SPAN               : 6825115 - 6825182
LENGTH             : 68
SEQUENCE           : TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA
OVERHANG THRESHOLD : 75%
*****************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-188-3p
ACCID      : MI0000230
PARENT     : mmu-mir-188
CHROMOSOME : X
START      : 6825115
STOP       : 6825182
OFFSET     : 45..65
SEQUENCE   : CTCCCACATGCAGGGTTTGCA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-188-5p
ACCID      : MI0000230
PARENT     : mmu-mir-188
CHROMOSOME : X
START      : 6825115
STOP       : 6825182
OFFSET     : 6..26
SEQUENCE   : CATCCCTTGCATGGTGGAGGG
STRAND     : -
******************************



*** MATURE-3P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF                  X                    6825115 - 6825182    
                                            CTCCCACATGCAGGGTTTGCA    MATURE-3P            X                    6825160 - 6825247    mmu-miR-188-3p       -                    
     CATCCCTTGCATGGTGGAGGG                                           MATURE-5P            X                    6825121 - 6825208    mmu-miR-188-5p       -                    
____________________________________________________________________

                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................TCCCACATGCAGGGTTTGCA....   read_209209_0_1_0_1_3_1    MATURE-3P            6        66.67            1        33.33            5        83.33                        20   
.............................................TCCCACATGCAGGGTTTGC.....    read_54006_0_0_1_0_0_1    MATURE-3P            2        22.22            1        33.33            1        16.67                        19   
.............................................TCCCACATGCAGGGTTTGCAt...    read_50548_0_0_1_0_0_0    MATURE-3P            1        11.11            1        33.33            0         0.00            t           20   
                                                                                                               ----------                ----------                ----------   
                                                                                                                        9                         3                         6                                          
                                                                                                                                            (33.33)                   (66.67)                                       




*** MATURE-5P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF                  X                    6825115 - 6825182    
                                            CTCCCACATGCAGGGTTTGCA    MATURE-3P            X                    6825160 - 6825247    mmu-miR-188-3p       -                    
     CATCCCTTGCATGGTGGAGGG                                           MATURE-5P            X                    6825121 - 6825208    mmu-miR-188-5p       -                    
____________________________________________________________________

                                                                -SEQ-                         -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......ATCCCTTGCATGGTGGAGGGT..........................................   read_112390_10_13_7_17_12_18    MATURE-5P           77        27.60           30        21.58           47        33.57                        21   
......ATCCCTTGCATGGTGGAGGGTt.........................................         read_72456_5_7_4_3_8_5    MATURE-5P           32        11.47           16        11.51           16        11.43            t           21   
......ATCCCTTGCATGGTGGAGGG...........................................        read_187633_4_2_1_6_6_5    MATURE-5P           24         8.60            7         5.04           17        12.14                        20   
......ATCCCTTGCATGGTGGAGGGTtt........................................        read_304462_4_1_1_4_0_6    MATURE-5P           16         5.73            6         4.32           10         7.14           tt           21   
......ATCCCTTGCATGGTGGAGG............................................        read_315598_1_1_3_3_1_5    MATURE-5P           14         5.02            5         3.60            9         6.43                        19   
......ATCCCTTGCATGGTGGAGGGTat........................................        read_259483_3_4_0_1_0_4    MATURE-5P           12         4.30            7         5.04            5         3.57           at           21   
......ATCCCTTGCATGGTGGAGGGa..........................................        read_168718_2_1_2_0_0_2    MATURE-5P            7         2.51            5         3.60            2         1.43            a           20   
......ATCCCTTGCATGGTGGAG.............................................         read_28252_2_0_2_1_0_1    MATURE-5P            6         2.15            4         2.88            2         1.43                        18   
......ATCCCTTGCATGGTGGAGGGTa.........................................        read_104408_2_0_1_0_1_2    MATURE-5P            6         2.15            3         2.16            3         2.14            a           21   
......ATCCCTTGCATGGTGGAGGGTaa........................................        read_277236_1_2_2_1_0_0    MATURE-5P            6         2.15            5         3.60            1         0.71           aa           21   
......ATCCCTTGCATGGTGGAGGGTttt.......................................         read_81511_1_2_1_0_0_1    MATURE-5P            5         1.79            4         2.88            1         0.71          ttt           21   
......ATCCCTTGCATGGTGGAGGGTaaa.......................................         read_89276_2_1_0_0_0_1    MATURE-5P            4         1.43            3         2.16            1         0.71          aaa           21   
......ATCCCTTGCATGGTGGAGGaat.........................................         read_68880_2_1_0_0_1_0    MATURE-5P            4         1.43            3         2.16            1         0.71          aat           19   
......ATCCCTTGCATGGTGGAGGGg..........................................        read_157279_0_1_1_0_1_0    MATURE-5P            3         1.08            2         1.44            1         0.71            g           20   
......ATCCCTTGCATGGTGGAGGGTtat.......................................        read_278381_0_2_1_0_0_0    MATURE-5P            3         1.08            3         2.16            0         0.00          tat           21   
......ATCCCTTGCATGGTGGAGGGTta........................................        read_274124_2_1_0_0_0_0    MATURE-5P            3         1.08            3         2.16            0         0.00           ta           21   
......ATCCCTTGCATGGTGGAGGGaat........................................        read_118849_1_0_1_1_0_0    MATURE-5P            3         1.08            2         1.44            1         0.71          aat           20   
......ATCCCTTGCATGGTGGAGGGTtaa.......................................        read_297225_0_0_1_0_0_1    MATURE-5P            2         0.72            1         0.72            1         0.71          taa           21   
......ATCCCTTGCATGGTGGcGGGT..........................................        read_171454_1_0_1_0_0_0    MATURE-5P            2         0.72            2         1.44            0         0.00                      16C4   
......ATCCCTTGCATGGTGGAGGGTaat.......................................        read_145747_0_0_0_1_0_1    MATURE-5P            2         0.72            0         0.00            2         1.43          aat           21   
......ATCCCTTGCATGGTGGAGGGat.........................................        read_351652_1_1_0_0_0_0    MATURE-5P            2         0.72            2         1.44            0         0.00           at           20   
......ATCCCTTGCATGGTGGAGGGgt.........................................        read_324844_1_0_0_0_1_0    MATURE-5P            2         0.72            1         0.72            1         0.71           gt           20   
......ATCCCTTGCATGGTGtAGGG...........................................        read_388487_0_1_0_0_1_0    MATURE-5P            2         0.72            1         0.72            1         0.71                      15T4   
......ATCCCTTGCATGGTGGAGGGTac........................................        read_372484_0_0_1_0_0_1    MATURE-5P            2         0.72            1         0.72            1         0.71           ac           21   
......ATCCCTTGCATGGTGGAGGGTatt.......................................        read_199267_0_0_0_0_1_1    MATURE-5P            2         0.72            0         0.00            2         1.43          att           21   
......ATCCCTTGCATGGTGGAGGGc..........................................        read_288643_0_1_1_0_0_0    MATURE-5P            2         0.72            2         1.44            0         0.00            c           20   
......ATCCCTTGCATGGTGGAGGGTttaa......................................        read_298027_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         ttaa           21   
......ATCCCTTGCATGGTGGcGGGTtt........................................         read_79556_0_0_0_0_0_1    MATURE-5P            1         0.36            0         0.00            1         0.71           tt         16C4   
......ATCCCTTGCATGGTGGAGGGTctaa......................................        read_175773_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         ctaa           21   
......ATCCCTTGCATGGTcGAGGGT..........................................         read_88062_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00                      14C6   
......ATCCCTTcCATGGTGGAGGGTa.........................................         read_38795_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00            a         7C13   
......ATCCCTTGCATGGTGGAGt............................................        read_257514_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71            t           18   
......ATCCCTTGCATGGTGGAGGGaata.......................................        read_231179_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         aata           20   
......ATCCCTTGCATGtTGGAGGGT..........................................         read_83201_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71                      12T8   
......ATCCCTTGCATGGTGGAGGaa..........................................        read_368875_0_0_0_0_0_1    MATURE-5P            1         0.36            0         0.00            1         0.71           aa           19   
......ATCCCTTGCATGGTGGAGGGaaga.......................................         read_34361_0_0_0_1_0_0    MATURE-5P            1         0.36            0         0.00            1         0.71         aaga           20   
......ATCCCTTGCATGGTaGAGGGTa.........................................        read_234245_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00            a         14A6   
......ATCCCTTGCATGGaGGAGGGT..........................................        read_391527_0_0_0_1_0_0    MATURE-5P            1         0.36            0         0.00            1         0.71                      13A7   
......ATCCCTTGCATGGTGGtGGG...........................................        read_199618_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00                      16T3   
......ATCCCTTGCATGGTcGAGGGTtt........................................         read_29869_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71           tt         14C6   
......ATCCCTTGCATGGTGGAGGGTag........................................         read_13967_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00           ag           21   
......ATCCCTTGCATGGTGGAGGGact........................................        read_275570_0_0_0_0_0_1    MATURE-5P            1         0.36            0         0.00            1         0.71          act           20   
......ATCCCTTGCATGGTGGAGGttaaa.......................................        read_384018_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00        ttaaa           19   
......ATCCCTTGCATGGTGGAGGGaataa......................................        read_328092_0_1_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00        aataa           20   
......ATCCCTTGCATGGTGGAGGGTGAG.......................................         read_41727_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00                        24   
......ATCCCTTGCATGGTGGAGGGaaag.......................................        read_147863_0_0_0_1_0_0    MATURE-5P            1         0.36            0         0.00            1         0.71         aaag           20   
......ATCCCTTGCATGGTcGAGGGTt.........................................         read_18628_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00            t         14C6   
......ATCCCTTGCATGGTGGAGGGga.........................................          read_6192_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00           ga           20   
......ATCCCTTGCATGGTGGAGGGTaaat......................................        read_150075_0_1_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         aaat           21   
......ATCCCTTGCATGGTGGAGGGca.........................................        read_307216_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71           ca           20   
......ATCCCTTGCATGGTaGAGGGTat........................................        read_114269_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00           at         14A6   
......ATCCCTTGCATGGTGGAGGGatt........................................        read_338209_0_0_0_0_0_1    MATURE-5P            1         0.36            0         0.00            1         0.71          att           20   
......ATCCCTTGCATGGTaGAGGGT..........................................        read_399350_1_0_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00                      14A6   
......ATCCCTTGCATGGTGGAtGGTatg.......................................        read_369596_0_1_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00          atg         17T3   
......ATCCCTTGCATGGTGGAGGtt..........................................        read_306830_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71           tt           19   
......ATCCCTTGCATGGTGGAGGGTtAGa......................................        read_198463_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00            a         21T2   
......ATCCCTTGCATGGTGGAGGGTtta.......................................        read_366632_0_1_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00          tta           21   
......ATCCCTTGCATGGTGGAGcGTa.........................................        read_105782_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71            a         18C2   
......ATCCCTTGCATGGTGGAGGGaa.........................................        read_148033_0_0_0_0_1_0    MATURE-5P            1         0.36            0         0.00            1         0.71           aa           20   
......ATCCCTTGCATGGTGGAGGGTtaaa......................................         read_61397_0_1_0_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         taaa           21   
......ATCCCTTGCATGGTGGAGGGTtttt......................................          read_7967_0_0_1_0_0_0    MATURE-5P            1         0.36            1         0.72            0         0.00         tttt           21   
......ATCCCTTGCATGGTGGAGGat..........................................        read_109058_0_0_0_1_0_0    MATURE-5P            1         0.36            0         0.00            1         0.71           at           19   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                           279                       139                       140                                          
                                                                                                                                                 (49.82)                   (50.18)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               3               6               9           3.12%
      MATURE-5P             139             140             279          96.88%
                     ----------      ----------      ----------                
                            142             146             288                



[END]
