[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************
ID : mmu-mir-188
DESCRIPTION : mmu-mir-188 MI0000230 Mus musculus miR-188 stem-loop
CHROMOSOME : X
SPAN : 6825115 - 6825182
LENGTH : 68
SEQUENCE : TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA
OVERHANG THRESHOLD : 75%
*****************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-188-3p
ACCID : MI0000230
PARENT : mmu-mir-188
CHROMOSOME : X
START : 6825115
STOP : 6825182
OFFSET : 45..65
SEQUENCE : CTCCCACATGCAGGGTTTGCA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-188-5p
ACCID : MI0000230
PARENT : mmu-mir-188
CHROMOSOME : X
START : 6825115
STOP : 6825182
OFFSET : 6..26
SEQUENCE : CATCCCTTGCATGGTGGAGGG
STRAND : -
******************************
*** MATURE-3P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF X 6825115 - 6825182
CTCCCACATGCAGGGTTTGCA MATURE-3P X 6825160 - 6825247 mmu-miR-188-3p -
CATCCCTTGCATGGTGGAGGG MATURE-5P X 6825121 - 6825208 mmu-miR-188-5p -
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................TCCCACATGCAGGGTTTGCA.... read_209209_0_1_0_1_3_1 MATURE-3P 6 66.67 1 33.33 5 83.33 20
.............................................TCCCACATGCAGGGTTTGC..... read_54006_0_0_1_0_0_1 MATURE-3P 2 22.22 1 33.33 1 16.67 19
.............................................TCCCACATGCAGGGTTTGCAt... read_50548_0_0_1_0_0_0 MATURE-3P 1 11.11 1 33.33 0 0.00 t 20
---------- ---------- ----------
9 3 6
(33.33) (66.67)
*** MATURE-5P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF X 6825115 - 6825182
CTCCCACATGCAGGGTTTGCA MATURE-3P X 6825160 - 6825247 mmu-miR-188-3p -
CATCCCTTGCATGGTGGAGGG MATURE-5P X 6825121 - 6825208 mmu-miR-188-5p -
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......ATCCCTTGCATGGTGGAGGGT.......................................... read_112390_10_13_7_17_12_18 MATURE-5P 77 27.60 30 21.58 47 33.57 21
......ATCCCTTGCATGGTGGAGGGTt......................................... read_72456_5_7_4_3_8_5 MATURE-5P 32 11.47 16 11.51 16 11.43 t 21
......ATCCCTTGCATGGTGGAGGG........................................... read_187633_4_2_1_6_6_5 MATURE-5P 24 8.60 7 5.04 17 12.14 20
......ATCCCTTGCATGGTGGAGGGTtt........................................ read_304462_4_1_1_4_0_6 MATURE-5P 16 5.73 6 4.32 10 7.14 tt 21
......ATCCCTTGCATGGTGGAGG............................................ read_315598_1_1_3_3_1_5 MATURE-5P 14 5.02 5 3.60 9 6.43 19
......ATCCCTTGCATGGTGGAGGGTat........................................ read_259483_3_4_0_1_0_4 MATURE-5P 12 4.30 7 5.04 5 3.57 at 21
......ATCCCTTGCATGGTGGAGGGa.......................................... read_168718_2_1_2_0_0_2 MATURE-5P 7 2.51 5 3.60 2 1.43 a 20
......ATCCCTTGCATGGTGGAG............................................. read_28252_2_0_2_1_0_1 MATURE-5P 6 2.15 4 2.88 2 1.43 18
......ATCCCTTGCATGGTGGAGGGTa......................................... read_104408_2_0_1_0_1_2 MATURE-5P 6 2.15 3 2.16 3 2.14 a 21
......ATCCCTTGCATGGTGGAGGGTaa........................................ read_277236_1_2_2_1_0_0 MATURE-5P 6 2.15 5 3.60 1 0.71 aa 21
......ATCCCTTGCATGGTGGAGGGTttt....................................... read_81511_1_2_1_0_0_1 MATURE-5P 5 1.79 4 2.88 1 0.71 ttt 21
......ATCCCTTGCATGGTGGAGGGTaaa....................................... read_89276_2_1_0_0_0_1 MATURE-5P 4 1.43 3 2.16 1 0.71 aaa 21
......ATCCCTTGCATGGTGGAGGaat......................................... read_68880_2_1_0_0_1_0 MATURE-5P 4 1.43 3 2.16 1 0.71 aat 19
......ATCCCTTGCATGGTGGAGGGg.......................................... read_157279_0_1_1_0_1_0 MATURE-5P 3 1.08 2 1.44 1 0.71 g 20
......ATCCCTTGCATGGTGGAGGGTtat....................................... read_278381_0_2_1_0_0_0 MATURE-5P 3 1.08 3 2.16 0 0.00 tat 21
......ATCCCTTGCATGGTGGAGGGTta........................................ read_274124_2_1_0_0_0_0 MATURE-5P 3 1.08 3 2.16 0 0.00 ta 21
......ATCCCTTGCATGGTGGAGGGaat........................................ read_118849_1_0_1_1_0_0 MATURE-5P 3 1.08 2 1.44 1 0.71 aat 20
......ATCCCTTGCATGGTGGAGGGTtaa....................................... read_297225_0_0_1_0_0_1 MATURE-5P 2 0.72 1 0.72 1 0.71 taa 21
......ATCCCTTGCATGGTGGcGGGT.......................................... read_171454_1_0_1_0_0_0 MATURE-5P 2 0.72 2 1.44 0 0.00 16C4
......ATCCCTTGCATGGTGGAGGGTaat....................................... read_145747_0_0_0_1_0_1 MATURE-5P 2 0.72 0 0.00 2 1.43 aat 21
......ATCCCTTGCATGGTGGAGGGat......................................... read_351652_1_1_0_0_0_0 MATURE-5P 2 0.72 2 1.44 0 0.00 at 20
......ATCCCTTGCATGGTGGAGGGgt......................................... read_324844_1_0_0_0_1_0 MATURE-5P 2 0.72 1 0.72 1 0.71 gt 20
......ATCCCTTGCATGGTGtAGGG........................................... read_388487_0_1_0_0_1_0 MATURE-5P 2 0.72 1 0.72 1 0.71 15T4
......ATCCCTTGCATGGTGGAGGGTac........................................ read_372484_0_0_1_0_0_1 MATURE-5P 2 0.72 1 0.72 1 0.71 ac 21
......ATCCCTTGCATGGTGGAGGGTatt....................................... read_199267_0_0_0_0_1_1 MATURE-5P 2 0.72 0 0.00 2 1.43 att 21
......ATCCCTTGCATGGTGGAGGGc.......................................... read_288643_0_1_1_0_0_0 MATURE-5P 2 0.72 2 1.44 0 0.00 c 20
......ATCCCTTGCATGGTGGAGGGTttaa...................................... read_298027_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 ttaa 21
......ATCCCTTGCATGGTGGcGGGTtt........................................ read_79556_0_0_0_0_0_1 MATURE-5P 1 0.36 0 0.00 1 0.71 tt 16C4
......ATCCCTTGCATGGTGGAGGGTctaa...................................... read_175773_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 ctaa 21
......ATCCCTTGCATGGTcGAGGGT.......................................... read_88062_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 14C6
......ATCCCTTcCATGGTGGAGGGTa......................................... read_38795_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 a 7C13
......ATCCCTTGCATGGTGGAGt............................................ read_257514_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 t 18
......ATCCCTTGCATGGTGGAGGGaata....................................... read_231179_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 aata 20
......ATCCCTTGCATGtTGGAGGGT.......................................... read_83201_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 12T8
......ATCCCTTGCATGGTGGAGGaa.......................................... read_368875_0_0_0_0_0_1 MATURE-5P 1 0.36 0 0.00 1 0.71 aa 19
......ATCCCTTGCATGGTGGAGGGaaga....................................... read_34361_0_0_0_1_0_0 MATURE-5P 1 0.36 0 0.00 1 0.71 aaga 20
......ATCCCTTGCATGGTaGAGGGTa......................................... read_234245_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 a 14A6
......ATCCCTTGCATGGaGGAGGGT.......................................... read_391527_0_0_0_1_0_0 MATURE-5P 1 0.36 0 0.00 1 0.71 13A7
......ATCCCTTGCATGGTGGtGGG........................................... read_199618_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 16T3
......ATCCCTTGCATGGTcGAGGGTtt........................................ read_29869_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 tt 14C6
......ATCCCTTGCATGGTGGAGGGTag........................................ read_13967_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 ag 21
......ATCCCTTGCATGGTGGAGGGact........................................ read_275570_0_0_0_0_0_1 MATURE-5P 1 0.36 0 0.00 1 0.71 act 20
......ATCCCTTGCATGGTGGAGGttaaa....................................... read_384018_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 ttaaa 19
......ATCCCTTGCATGGTGGAGGGaataa...................................... read_328092_0_1_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 aataa 20
......ATCCCTTGCATGGTGGAGGGTGAG....................................... read_41727_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 24
......ATCCCTTGCATGGTGGAGGGaaag....................................... read_147863_0_0_0_1_0_0 MATURE-5P 1 0.36 0 0.00 1 0.71 aaag 20
......ATCCCTTGCATGGTcGAGGGTt......................................... read_18628_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 t 14C6
......ATCCCTTGCATGGTGGAGGGga......................................... read_6192_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 ga 20
......ATCCCTTGCATGGTGGAGGGTaaat...................................... read_150075_0_1_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 aaat 21
......ATCCCTTGCATGGTGGAGGGca......................................... read_307216_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 ca 20
......ATCCCTTGCATGGTaGAGGGTat........................................ read_114269_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 at 14A6
......ATCCCTTGCATGGTGGAGGGatt........................................ read_338209_0_0_0_0_0_1 MATURE-5P 1 0.36 0 0.00 1 0.71 att 20
......ATCCCTTGCATGGTaGAGGGT.......................................... read_399350_1_0_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 14A6
......ATCCCTTGCATGGTGGAtGGTatg....................................... read_369596_0_1_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 atg 17T3
......ATCCCTTGCATGGTGGAGGtt.......................................... read_306830_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 tt 19
......ATCCCTTGCATGGTGGAGGGTtAGa...................................... read_198463_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 a 21T2
......ATCCCTTGCATGGTGGAGGGTtta....................................... read_366632_0_1_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 tta 21
......ATCCCTTGCATGGTGGAGcGTa......................................... read_105782_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 a 18C2
......ATCCCTTGCATGGTGGAGGGaa......................................... read_148033_0_0_0_0_1_0 MATURE-5P 1 0.36 0 0.00 1 0.71 aa 20
......ATCCCTTGCATGGTGGAGGGTtaaa...................................... read_61397_0_1_0_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 taaa 21
......ATCCCTTGCATGGTGGAGGGTtttt...................................... read_7967_0_0_1_0_0_0 MATURE-5P 1 0.36 1 0.72 0 0.00 tttt 21
......ATCCCTTGCATGGTGGAGGat.......................................... read_109058_0_0_0_1_0_0 MATURE-5P 1 0.36 0 0.00 1 0.71 at 19
---------- ---------- ----------
279 139 140
(49.82) (50.18)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 3 6 9 3.12%
MATURE-5P 139 140 279 96.88%
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142 146 288
[END]