[BEGIN]

REFERENCE HAIRPIN
**************************************************************************************
ID                 : mmu-mir-185
DESCRIPTION        : mmu-mir-185 MI0000227 Mus musculus miR-185 stem-loop
CHROMOSOME         : 16
SPAN               : 18327494 - 18327558
LENGTH             : 65
SEQUENCE           : AGGGATTGGAGAGAAAGGCAGTTCCTGATGGTCCCCTCCCAGGGGCTGGCTTTCCTCTGGTCCTT
OVERHANG THRESHOLD : 75%
**************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-185
ACCID      : MI0000227
PARENT     : mmu-mir-185
CHROMOSOME : 16
START      : 18327494
STOP       : 18327558
OFFSET     : 7..28
SEQUENCE   : TGGAGAGAAAGGCAGTTCCTGA
STRAND     : -
******************************



*** MATURE ***
_________________________________________________________________
AGGGATTGGAGAGAAAGGCAGTTCCTGATGGTCCCCTCCCAGGGGCTGGCTTTCCTCTGGTCCTT REF                  16                   18327494 - 18327558  
      TGGAGAGAAAGGCAGTTCCTGA                                      MATURE               16                   18327501 - 18327586  mmu-miR-185          -                    
_________________________________________________________________

                                                             -SEQ-                             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......GGAGAGAAAGGCAGTTCCTGA......................................   read_176715_158_140_112_49_69_54       MATURE          582        40.70          410        39.16          172        44.91                        21   
.......GGAGAGAAAGGCAGTTCCTGAT.....................................         read_203649_52_48_32_8_8_8       MATURE          156        10.91          132        12.61           24         6.27                        22   
.......GGAGAGAAAGGCAGTTCCTGt......................................         read_60299_35_35_21_9_5_16       MATURE          121         8.46           91         8.69           30         7.83            t           20   
.......GGAGAGAAAGGCAGTTCCTGAa.....................................        read_259280_31_32_18_3_11_6       MATURE          101         7.06           81         7.74           20         5.22            a           21   
.......GGAGAGAAAGGCAGTTCCTG.......................................       read_56443_17_21_21_12_10_17       MATURE           98         6.85           59         5.64           39        10.18                        20   
.......GGAGAGAAAGGCAGTTCCT........................................          read_38141_11_16_10_2_7_4       MATURE           50         3.50           37         3.53           13         3.39                        19   
.......GGAGAGAAAGGCAGTTCCTGAat....................................          read_345268_10_11_2_1_3_6       MATURE           33         2.31           23         2.20           10         2.61           at           21   
.......GGAGAGAAAGGCAGTTCCTGAaa....................................           read_125098_9_10_2_1_2_2       MATURE           26         1.82           21         2.01            5         1.31           aa           21   
.......GGAGAGAAAGGCAGTTCCTGATt....................................            read_142298_6_3_2_1_1_2       MATURE           15         1.05           11         1.05            4         1.04            t           22   
.......GGAGAGAAAGGCAGTTCCTGtt.....................................            read_372913_3_3_4_2_1_1       MATURE           14         0.98           10         0.96            4         1.04           tt           20   
.......GGAGAGAAAGGCAGcTCCTGA......................................            read_222969_8_0_1_0_0_2       MATURE           11         0.77            9         0.86            2         0.52                      14C6   
.......GGAGAGAAAGGCAGTTCCTGtat....................................            read_139478_3_4_2_0_1_0       MATURE           10         0.70            9         0.86            1         0.26          tat           20   
.......GGAGAGAAAGGCAGTTtCTGA......................................            read_335277_1_2_2_0_2_2       MATURE            9         0.63            5         0.48            4         1.04                      16T4   
.......GGAGAGAAAGGCAGTTCCTGtaa....................................             read_51879_4_1_4_0_0_0       MATURE            9         0.63            9         0.86            0         0.00          taa           20   
.......GGAGAGAAAGGCAGTTCCTGc......................................             read_57770_2_2_2_1_0_2       MATURE            9         0.63            6         0.57            3         0.78            c           20   
.......GGAGAGAAAGGCAGTTCCTa.......................................            read_328770_3_2_2_1_0_1       MATURE            9         0.63            7         0.67            2         0.52            a           19   
.......GGAGAGAAAGGCAGTTCC.........................................            read_152659_4_2_0_1_1_0       MATURE            8         0.56            6         0.57            2         0.52                        18   
.......GGAGAGAAAGGCAGTTCCTat......................................             read_41226_4_4_0_0_0_0       MATURE            8         0.56            8         0.76            0         0.00           at           19   
.......GGAGAGAAAGGCAGTTCCTt.......................................            read_175208_1_3_0_1_1_1       MATURE            7         0.49            4         0.38            3         0.78            t           19   
.......GGAGAGAAAGGCAGTTCCTtt......................................            read_128650_2_0_0_1_1_3       MATURE            7         0.49            2         0.19            5         1.31           tt           19   
.......GGAGAGAAAGGCAGTTCCTGAg.....................................            read_391538_4_2_0_0_0_1       MATURE            7         0.49            6         0.57            1         0.26            g           21   
.......GGAGAGAAAGGCAGTTCCTGttt....................................            read_345178_1_4_1_0_1_0       MATURE            7         0.49            6         0.57            1         0.26          ttt           20   
.......GGAGAGAAAGGCAGTTCCTGAgt....................................            read_301845_2_1_2_0_0_1       MATURE            6         0.42            5         0.48            1         0.26           gt           21   
.......GGAGAGAAAGGCAGTTCCTta......................................            read_191431_1_3_1_0_0_1       MATURE            6         0.42            5         0.48            1         0.26           ta           19   
.......GGAGAGAAAGGCAGTTCCTaa......................................             read_12003_0_3_1_0_0_1       MATURE            5         0.35            4         0.38            1         0.26           aa           19   
.......GGAGAGAAAGGCAGTTCCTGta.....................................            read_231221_2_1_1_1_0_0       MATURE            5         0.35            4         0.38            1         0.26           ta           20   
.......GGAGAGAAAGGCAGTTCCTGATa....................................             read_43229_1_1_2_0_0_0       MATURE            4         0.28            4         0.38            0         0.00            a           22   
..........GAGAAAGGCAGTTCCTGA......................................            read_407191_0_1_1_1_1_0       MATURE            4         0.28            2         0.19            2         0.52                        18   
.......GGAGAGAAAGGCAGTTCCcGA......................................            read_100596_1_0_0_0_1_1       MATURE            3         0.21            1         0.10            2         0.52                      18C2   
.......GGAGAGAAAGGCAGTTCCTGAag....................................             read_87211_1_2_0_0_0_0       MATURE            3         0.21            3         0.29            0         0.00           ag           21   
.......GGAGAGAAAGGCAGTTC..........................................            read_384130_2_0_0_0_0_1       MATURE            3         0.21            2         0.19            1         0.26                        17   
.......GGAGAGAAAGGCAGTTCCa........................................            read_333491_1_0_1_1_0_0       MATURE            3         0.21            2         0.19            1         0.26            a           18   
..........GAGAAAGGCAGTTCCTGAaa....................................            read_292698_0_0_0_1_2_0       MATURE            3         0.21            0         0.00            3         0.78           aa           18   
.......GGAGAGAAAGGCAGTTCCTGtaaa...................................            read_194217_1_0_0_1_0_1       MATURE            3         0.21            1         0.10            2         0.52         taaa           20   
.......GGAGAGAAAGGCAGTTtCTGAa.....................................             read_15710_0_0_2_0_1_0       MATURE            3         0.21            2         0.19            1         0.26            a         16T4   
.......GGAGAGAAAGGCAGTTCCTGAaaa...................................            read_218178_1_0_0_0_1_1       MATURE            3         0.21            1         0.10            2         0.52          aaa           21   
.......GGAGAGAAAGGCAGTTtCTGAaa....................................            read_187259_0_2_0_0_0_0       MATURE            2         0.14            2         0.19            0         0.00           aa         16T4   
.......GGAGAGAAAGGCAGTTCCTGg......................................            read_389108_0_0_2_0_0_0       MATURE            2         0.14            2         0.19            0         0.00            g           20   
.......GGAGAGAAAGGCAGcTCCTGAT.....................................               read_971_1_1_0_0_0_0       MATURE            2         0.14            2         0.19            0         0.00                      14C7   
.......GGAGAGAAAGGCAGaTCCTGAT.....................................            read_173831_2_0_0_0_0_0       MATURE            2         0.14            2         0.19            0         0.00                      14A7   
.......GGAGAGcAAGGCAGTTCCTGA......................................            read_236813_0_1_1_0_0_0       MATURE            2         0.14            2         0.19            0         0.00                      6C14   
.......GGAGAGAAAGGCAGTTCCTGAc.....................................             read_90191_1_1_0_0_0_0       MATURE            2         0.14            2         0.19            0         0.00            c           21   
.......GGAGAGAAAGGCAGTTCCTcaa.....................................            read_255515_0_0_0_0_2_0       MATURE            2         0.14            0         0.00            2         0.52          caa           19   
.......GGAGAGAAAGGCAGTTCCTGct.....................................            read_369683_0_0_2_0_0_0       MATURE            2         0.14            2         0.19            0         0.00           ct           20   
.......GGAGAGAAAGGCAaTTCCTGA......................................             read_85465_0_1_0_0_1_0       MATURE            2         0.14            1         0.10            1         0.26                      13A7   
.......GGAGAGAAAGGCAGTTCCTGtag....................................            read_378296_0_0_2_0_0_0       MATURE            2         0.14            2         0.19            0         0.00          tag           20   
.......GGAGAGAAAGGCAGTTCCTGATtt...................................            read_113489_0_0_1_0_0_1       MATURE            2         0.14            1         0.10            1         0.26           tt           22   
.......GGAGgGAAAGGCAGTTCCTGA......................................            read_285962_0_0_1_0_0_1       MATURE            2         0.14            1         0.10            1         0.26                      4G16   
.......GGAGAGAAAGGCAGTTaCTGAT.....................................            read_149366_1_0_0_0_0_1       MATURE            2         0.14            1         0.10            1         0.26                      16A5   
.......GGAGAGAAAGGCAGTTCtTGAa.....................................            read_193084_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00            a         17T3   
.......GGAGAGAAAGGCAGTTtCTGAT.....................................             read_88430_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      16T5   
.......GGAGAGAAAGGCAGTTCCTtAT.....................................            read_192222_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      19T2   
.......GGAGAGAAAGGCAGTTCCTtca.....................................            read_154231_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          tca           19   
.......GGAGAGAAAGGCAGTTCCTGATaa...................................            read_318836_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           aa           22   
.........gGAGAAAGGCAGTTCCTGA......................................            read_280237_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                        18   
.......GGAGAGAAAGGCAGTTCtTGA......................................            read_246802_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.26                      17T3   
.......GGAGAGAAAGGCAGTTCCTGttat...................................            read_274412_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00         ttat           20   
.......GGAGAGAAAGGCAGTTtCTGAat....................................            read_319908_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           at         16T4   
..........GAGAAAGGCAGTTCCTGAa.....................................            read_144634_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26            a           18   
.......GGAGAGAAAGGCAGTTCgTGA......................................            read_174094_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      17G3   
.......GGAGAGAAAGGCAGTTCCcGAag....................................            read_177902_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ag         18C2   
.......GGAGAGAAAGGCtGTTCCTGA......................................            read_171023_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      12T8   
.......tGAGAGAAAGGCAGTTCCT........................................             read_44943_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26                        18   
.......GGgGAGAAAGGCAGTTCCTGA......................................            read_322846_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      2G18   
.......GGAGAGAAAGGCAGTTCCTGAga....................................             read_16000_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ga           21   
.......GGAGAGAAAaGCAGTTCCTGA......................................            read_327538_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.26                      9A11   
.......tGAGAGAAAGGCAGTTCCTG.......................................            read_177654_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.26                        19   
.......GGAGAGAAAGGCAGTTCtTGAT.....................................            read_305413_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      17T4   
.......GGAGAGAAAGGCAGcTCCTGAa.....................................            read_247050_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00            a         14C6   
.......GGAGAGAAAGGCAGTTCCTGATG....................................            read_184632_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                        23   
.......GGAGAGAAAGGCAGTTCCTGgat....................................             read_22430_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26          gat           20   
.........AGAGAAAGGCAGTTCCTGA......................................            read_336610_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                        19   
.......GGAGAGAAAGGCAGTTCCcgc......................................            read_363397_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          cgc           18   
.......GGAGAGAAAGGCAGTTCCTGtaat...................................            read_261286_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.26         taat           20   
.......GGAGAGAAAGGCAGTTCCTGgg.....................................              read_2644_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           gg           20   
.......GGAGgGAAAGGCAGTTCCTGAat....................................            read_356389_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           at         4G16   
.......GGAGAGAAAGGCAGTTCCTGAaga...................................            read_210575_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          aga           21   
.......GGAGAGAAAGGCAGTTCCTttt.....................................            read_289106_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          ttt           19   
.......GGAGAGAAAGGCAGTTCCTGca.....................................            read_175685_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ca           20   
.......GGAGAGAAAGGCAGTTCCTGATta...................................            read_401719_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ta           22   
.......GGAGAGAAAGGCAGTTCCTGtac....................................            read_243172_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          tac           20   
.......GGAGAGAAAGGCAGTTCCcGAat....................................            read_213933_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           at         18C2   
.......GGAGAGAAAGGCAGTTCCTGAaaca..................................            read_111187_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26         aaca           21   
.......GGAGAGAAAGGCAGTTCCTGttc....................................            read_396538_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          ttc           20   
.......GGAGAGAAAGGCAGTTCaTGA......................................            read_251187_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      17A3   
.......GGAGAGAAAtGCAGTTCCTGA......................................            read_291397_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26                      9T11   
.......GGAGAGAAAGGCAGTTCCTGAata...................................             read_33454_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          ata           21   
.......GGAcAGAAAGGCAGTTCCTGAT.....................................             read_95508_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.26                      3C18   
.......GGAGgGAAAGGCAGTTCCTGAa.....................................            read_241841_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00            a         4G16   
.......GGAGAGAAAGGCAGTTCCTag......................................            read_212870_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ag           19   
.......GGAGAGAAAGGCAGTTCCTGAac....................................            read_161016_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.26           ac           21   
.......GGAGAGAAAGGCAGTTCCTtta.....................................            read_236429_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.26          tta           19   
.......GGAGAGAAAGGCAGTTCCTata.....................................            read_332066_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          ata           19   
.......GGAGAGAAAGGCAGTTCCTGAagt...................................             read_87810_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          agt           21   
.......GGAGAGAAAGGCgGTTCCTG.......................................            read_282174_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      12G7   
.......GGAGAGAAAGGCAGTTCCTGga.....................................              read_9571_0_1_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           ga           20   
.......GGAGtGAAAGGCAGTTCCTGA......................................            read_286044_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00                      4T16   
.......GGAGAGAAAGGCAGTTCCg........................................             read_29949_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.26            g           18   
.......GGAGAGAAAGGCAGcTCCTGAat....................................            read_352080_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00           at         14C6   
.......GGAGAGAAAGGCAGTTCCTtaaa....................................            read_318160_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.26         taaa           19   
........GAGAGAAAGGCAGTTCCTatt.....................................            read_105015_1_0_0_0_0_0       MATURE            1         0.07            1         0.10            0         0.00          att           18   
.......GGAGAGAAAGGCAGTTaCTGATt....................................            read_105713_0_0_1_0_0_0       MATURE            1         0.07            1         0.10            0         0.00            t         16A5   
                                                                                                                     ----------                ----------                ----------   
                                                                                                                           1430                      1047                       383                                          
                                                                                                                                                  (73.22)                   (26.78)                                       




*** OTHER ***
_________________________________________________________________
AGGGATTGGAGAGAAAGGCAGTTCCTGATGGTCCCCTCCCAGGGGCTGGCTTTCCTCTGGTCCTT REF                  16                   18327494 - 18327558  
      TGGAGAGAAAGGCAGTTCCTGA                                      MATURE               16                   18327501 - 18327586  mmu-miR-185          -                    
_________________________________________________________________

                                                             -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................................GGGGCTGGCTTTCCTCTGGT.....   read_105712_1_0_1_1_0_0        OTHER            3        50.00            2        50.00            1        50.00                        20   
.........................................GGGGCTGGCTTTCCTCTGG......   read_378623_2_0_0_0_0_0        OTHER            2        33.33            2        50.00            0         0.00                        19   
.........................................GGGGCTGGCTTTCCTCT........    read_42768_0_0_0_1_0_0        OTHER            1        16.67            0         0.00            1        50.00                        17   
                                                                                                            ----------                ----------                ----------   
                                                                                                                     6                         4                         2                                          
                                                                                                                                         (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE            1047             383            1430          99.58%
          OTHER               4               2               6           0.42%
                     ----------      ----------      ----------                
                           1051             385            1436                



[END]
