[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************
ID                 : mmu-mir-1839
DESCRIPTION        : mmu-mir-1839 MI0009991 Mus musculus miR-1839 stem-loop
CHROMOSOME         : 7
SPAN               : 88674802 - 88674874
LENGTH             : 73
SEQUENCE           : GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT
OVERHANG THRESHOLD : 75%
**********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-1839-3p
ACCID      : MI0009991
PARENT     : mmu-mir-1839
CHROMOSOME : 7
START      : 88674802
STOP       : 88674874
OFFSET     : 43..65
SEQUENCE   : AGACCTACTTATCTACCAACAGC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-1839-5p
ACCID      : MI0009991
PARENT     : mmu-mir-1839
CHROMOSOME : 7
START      : 88674802
STOP       : 88674874
OFFSET     : 4..25
SEQUENCE   : AAGGTAGATAGAACAGGTCTTG
STRAND     : +
******************************



*** MATURE-3P ***
_________________________________________________________________________
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT REF                  7                    88674802 - 88674874  
                                          AGACCTACTTATCTACCAACAGC         MATURE-3P            7                    88674845 - 88674939  mmu-miR-1839-3p      +                    
   AAGGTAGATAGAACAGGTCTTG                                                 MATURE-5P            7                    88674806 - 88674899  mmu-miR-1839-5p      +                    
_________________________________________________________________________

                                                                     -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................GACCTACTTATCTACCAACAG..........   read_115597_0_1_1_0_0_0    MATURE-3P            2        25.00            2        33.33            0         0.00                        21   
...........................................GACCTACTTATCTACCAACAGt.........   read_309498_0_1_1_0_0_0    MATURE-3P            2        25.00            2        33.33            0         0.00            t           21   
..............................................CTACTTATCTACCAACAG..........   read_275562_0_0_0_1_0_0    MATURE-3P            1        12.50            0         0.00            1        50.00                        18   
...........................................GACCTACTTATCTACCAACAGCt........   read_228698_0_1_0_0_0_0    MATURE-3P            1        12.50            1        16.67            0         0.00            t           22   
...........................................GACCTACTTATCTACCAACAGC.........   read_270391_0_0_0_0_0_1    MATURE-3P            1        12.50            0         0.00            1        50.00                        22   
...........................................GACCTACTTATCTACCAAC............   read_272352_1_0_0_0_0_0    MATURE-3P            1        12.50            1        16.67            0         0.00                        19   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                             8                         6                         2                                          
                                                                                                                                                 (75.00)                   (25.00)                                       




*** MATURE-5P ***
_________________________________________________________________________
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT REF                  7                    88674802 - 88674874  
                                          AGACCTACTTATCTACCAACAGC         MATURE-3P            7                    88674845 - 88674939  mmu-miR-1839-3p      +                    
   AAGGTAGATAGAACAGGTCTTG                                                 MATURE-5P            7                    88674806 - 88674899  mmu-miR-1839-5p      +                    
_________________________________________________________________________

                                                                     -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....AGGTAGATAGAACAGGTCTTGT................................................   read_393650_34_54_24_16_13_17    MATURE-5P          158        23.87          112        24.83           46        21.80                        22   
....AGGTAGATAGAACAGGTCTTG.................................................   read_366102_22_37_29_24_10_19    MATURE-5P          141        21.30           88        19.51           53        25.12                        21   
....AGGTAGATAGAACAGGTCTTGa................................................        read_34011_9_20_11_7_7_6    MATURE-5P           60         9.06           40         8.87           20         9.48            a           21   
.....GGTAGATAGAACAGGTCTTGT................................................       read_196052_19_14_6_1_6_6    MATURE-5P           52         7.85           39         8.65           13         6.16                        21   
.....GGTAGATAGAACAGGTCTTG.................................................        read_74477_14_13_7_3_5_6    MATURE-5P           48         7.25           34         7.54           14         6.64                        20   
....AGGTAGATAGAACAGGTCTT..................................................         read_394384_7_6_4_0_2_5    MATURE-5P           24         3.63           17         3.77            7         3.32                        20   
.....GGTAGATAGAACAGGTCTTGa................................................         read_270184_4_4_2_0_4_2    MATURE-5P           16         2.42           10         2.22            6         2.84            a           20   
....AGGTAGATAGAACAGGTCTTt.................................................         read_370819_2_0_3_4_2_3    MATURE-5P           14         2.11            5         1.11            9         4.27            t           20   
....AGGTAGATAGAACAGGTCTTa.................................................          read_22617_2_1_4_1_0_0    MATURE-5P            8         1.21            7         1.55            1         0.47            a           20   
....AGGTAGATAGAACAGGTCTTGTa...............................................         read_163521_1_2_5_0_0_0    MATURE-5P            8         1.21            8         1.77            0         0.00            a           22   
....AGGTAGATAGAAaAGGTCTTGT................................................          read_14337_3_0_2_0_0_1    MATURE-5P            6         0.91            5         1.11            1         0.47                      12A9   
.....GGTAGATAGAACAGGTCTTGaa...............................................         read_143335_0_2_0_2_1_0    MATURE-5P            5         0.76            2         0.44            3         1.42           aa           20   
.....GGTAGATAGAACAGGTCTTGTT...............................................          read_49024_2_1_1_0_1_0    MATURE-5P            5         0.76            4         0.89            1         0.47                        22   
.....GGTAGATAGAACAGGTCTTGTa...............................................         read_127131_0_2_1_0_1_0    MATURE-5P            4         0.60            3         0.67            1         0.47            a           21   
....AGGTAGATAGAACAGGTCTTtt................................................         read_284370_0_1_1_0_1_1    MATURE-5P            4         0.60            2         0.44            2         0.95           tt           20   
....AGGTAGATAGAACAGGTCT...................................................          read_65780_1_1_0_1_1_0    MATURE-5P            4         0.60            2         0.44            2         0.95                        19   
....AGGTAGATAGAACAGGTCTTGaa...............................................          read_39257_1_1_1_0_0_1    MATURE-5P            4         0.60            3         0.67            1         0.47           aa           21   
....AGGTAGATAGAACAGGTCTTta................................................         read_165784_1_1_0_1_0_0    MATURE-5P            3         0.45            2         0.44            1         0.47           ta           20   
....AGGTAGATAGAACAGGT.....................................................         read_291976_0_0_0_1_2_0    MATURE-5P            3         0.45            0         0.00            3         1.42                        17   
....AGGTAGATAGAACAGGTCTTaa................................................         read_231342_2_0_1_0_0_0    MATURE-5P            3         0.45            3         0.67            0         0.00           aa           20   
....AGGTAGATAGAACAGGTCTTGTT...............................................         read_331869_1_1_1_0_0_0    MATURE-5P            3         0.45            3         0.67            0         0.00                        23   
....AGGTAGATAGAACAGGTCTTat................................................         read_234238_1_0_0_0_1_1    MATURE-5P            3         0.45            1         0.22            2         0.95           at           20   
.....GGTAGATAGAACAGGTCTT..................................................          read_86986_0_1_0_0_0_2    MATURE-5P            3         0.45            1         0.22            2         0.95                        19   
.........GATAGAACAGGTCTTGT................................................          read_36154_0_0_0_1_0_2    MATURE-5P            3         0.45            0         0.00            3         1.42                        17   
....AGGTAGATAGAACAGGTCa...................................................          read_82749_1_0_0_0_2_0    MATURE-5P            3         0.45            1         0.22            2         0.95            a           18   
....AGGTAGATAGAACAGGTCTTGat...............................................         read_107892_0_1_2_0_0_0    MATURE-5P            3         0.45            3         0.67            0         0.00           at           21   
.....GGTAGATAGAACAGGTCT...................................................          read_83801_0_1_0_1_0_1    MATURE-5P            3         0.45            1         0.22            2         0.95                        18   
....AGGTAGATAGAACAGGTCTTGTTT..............................................         read_224027_1_1_0_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00                        24   
....AGGTAGATAGAACAaGTCTTGT................................................         read_375350_2_0_0_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00                      14A7   
....AGGTAGATAGAACAGGcCTTGa................................................         read_221785_0_1_1_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00            a         16C4   
....AGGTAGATAGAAtAGGTCTTG.................................................         read_216844_0_0_1_0_0_1    MATURE-5P            2         0.30            1         0.22            1         0.47                      12T8   
.....GGTAGATAGAACAGGTCTTGat...............................................          read_33395_2_0_0_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00           at           20   
.....GGTAGATAGAACAGGTCTTt.................................................         read_151127_0_2_0_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00            t           19   
....AGGTAGATAGAACAGGTCTTac................................................         read_314378_0_0_2_0_0_0    MATURE-5P            2         0.30            2         0.44            0         0.00           ac           20   
.....GGTAGATAGAACAGGTCTTGTTT..............................................         read_385651_1_0_0_0_0_1    MATURE-5P            2         0.30            1         0.22            1         0.47                        23   
.....GGTAGATAGAACAGGTCTTta................................................          read_61686_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47           ta           19   
....AGGTAGATAGAACAGGcCTTG.................................................         read_143924_0_0_0_1_0_0    MATURE-5P            1         0.15            0         0.00            1         0.47                      16C4   
....AGGTAGATAGAACAGGTCTTGTat..............................................         read_341402_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           at           22   
....gGGTAGATAGAACAGGTCTTG.................................................         read_143519_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                        20   
....AGtTAGATAGAACAGGTCTTGT................................................         read_166733_0_0_0_1_0_0    MATURE-5P            1         0.15            0         0.00            1         0.47                      2T19   
.....GGTAGATAGAACAGGTCcTGTTT..............................................          read_67545_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      17C5   
....AGGTAGATAGAACAGGaCTTG.................................................         read_244957_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                      16A4   
....AGGTAGATAGAAtAGGTCTTGT................................................         read_349136_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                      12T9   
.....GGTAGATAGAACAGGTCTTGc................................................         read_100953_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            c           20   
.....GGTAGATAGAACAGGTCTTaa................................................         read_269334_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           aa           19   
....AGGTAGATAGAAaAGGTCTT..................................................         read_172258_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      12A7   
.....GGTAGATAGAACAGGTCTTa.................................................          read_95501_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a           19   
....gGGTAGATAGAACAGGTCTTa.................................................         read_311736_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a           19   
.....GGTAGATAGAACAGGTCTcg.................................................         read_216435_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           cg           18   
....AGGTAGATAGAAaAGGTCTTGa................................................         read_402571_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a         12A8   
....AGGTAGATAGAACAGGgCTTG.................................................         read_336961_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                      16G4   
....AGGTAGATAGAACAGGTCTTtta...............................................           read_4842_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          tta           20   
....AGGTAGcTAGAACAGGTCTTGT................................................         read_369542_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      6C15   
.....GGTAGATAGAACAGGTCTTtta...............................................         read_403809_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          tta           19   
....AGGTAGATAGAACAtGTCTTG.................................................         read_126848_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      14T6   
....AGGgAGATAGAACAGGTCTTGT................................................         read_214871_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      3G18   
....AGGTAGATgGAACAGGTCTTGT................................................         read_380739_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      8G13   
....AGGTAGATAGAAtAGGTCTTGc................................................         read_308211_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            c         12T8   
....AGGTAGATAGAACAGGTCTTca................................................         read_216691_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47           ca           20   
....AGGTAGATAGAACAGGgCTTGa................................................         read_259206_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a         16G4   
....AGGaAGATAGAACAGGTCTTGT................................................          read_64271_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      3A18   
........AGATAGAACAGGTCTTGT................................................         read_127147_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                        18   
....gGGTAGATAGAACAGGgCTTGT................................................         read_148628_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      15G5   
...AAGGTAGATAGAACAGGTCT...................................................         read_318810_0_0_0_1_0_0    MATURE-5P            1         0.15            0         0.00            1         0.47                        20   
....AGGTAGATAGAACAGGTCTTtaa...............................................          read_73103_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          taa           20   
....AGGTAGATAGAACAcGTCTTG.................................................         read_139457_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      14C6   
....AGGTAGgTAGAACAGGTCTTGa................................................         read_381275_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a         6G14   
.....GGTAGATAGAACAGGTCTTGagt..............................................         read_286230_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          agt           20   
....AGGTAGATAGAACAGGTCTcg.................................................         read_237318_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           cg           19   
....AGGTAGATAGAACcGGTCTTGc................................................         read_110222_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            c         13C7   
....AGGTAGATAGAACAGGTaTTGT................................................         read_313882_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      17A4   
....AGGTAGATAGAACAGGTCTTGTgt..............................................         read_205918_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           gt           22   
....AGGTAGATAGAACAGGcCTT..................................................         read_285779_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                      16C3   
...AAGGTAGATAGAACAGGTCTTGa................................................         read_110996_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00            a           22   
.....GGTAGATAGAACAGGTCTTGTat..............................................         read_237158_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           at           21   
....AGGTAGgTAGAACAGGTCTTG.................................................          read_27666_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      6G14   
.....GGTAGATAGAACAGGTCTTtt................................................         read_350010_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00           tt           19   
....AGGTAGATAGAACAtGTCTTGT................................................          read_46100_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      14T7   
.....GGTAGATAGAACAGGaCTTG.................................................          read_34383_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      15A4   
.....GGTAGATAGAACAGGTCTTaaa...............................................         read_405863_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          aaa           19   
.....GGTAGATAGAACAGGTCTTGTaa..............................................         read_133178_0_0_0_0_1_0    MATURE-5P            1         0.15            0         0.00            1         0.47           aa           21   
....AGGTAGATAGAACAGGaCTT..................................................         read_328873_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      16A3   
...AAGGTAGATAGAACAGGTaTT..................................................         read_358488_0_0_0_0_0_1    MATURE-5P            1         0.15            0         0.00            1         0.47                      18A2   
....AGGgAGATAGAACAGGTCTTG.................................................         read_314827_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      3G17   
....AGGTAGATAGAACAGGTC....................................................          read_72261_0_0_0_0_1_0    MATURE-5P            1         0.15            0         0.00            1         0.47                        18   
.....GGTAGATAGAACAGcTCTTG.................................................          read_22055_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      14C5   
....AGGTAGATAGAACAGGgCTTGT................................................         read_334817_0_0_1_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      16G5   
....AGGTAGATAGAACAGGTtTTG.................................................         read_109405_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                      17T3   
...AAGGTAGATAGAACAGGTCTT..................................................          read_24326_1_0_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00                        21   
....AGGTAGATAGAACAGGTCTTGaat..............................................          read_10962_0_1_0_0_0_0    MATURE-5P            1         0.15            1         0.22            0         0.00          aat           21   
                                                                                                                          ----------                ----------                ----------   
                                                                                                                                 662                       451                       211                                          
                                                                                                                                                       (68.13)                   (31.87)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               6               2               8           1.19%
      MATURE-5P             451             211             662          98.81%
                     ----------      ----------      ----------                
                            457             213             670                



[END]
