[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************
ID : mmu-mir-1839
DESCRIPTION : mmu-mir-1839 MI0009991 Mus musculus miR-1839 stem-loop
CHROMOSOME : 7
SPAN : 88674802 - 88674874
LENGTH : 73
SEQUENCE : GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT
OVERHANG THRESHOLD : 75%
**********************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-1839-3p
ACCID : MI0009991
PARENT : mmu-mir-1839
CHROMOSOME : 7
START : 88674802
STOP : 88674874
OFFSET : 43..65
SEQUENCE : AGACCTACTTATCTACCAACAGC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-1839-5p
ACCID : MI0009991
PARENT : mmu-mir-1839
CHROMOSOME : 7
START : 88674802
STOP : 88674874
OFFSET : 4..25
SEQUENCE : AAGGTAGATAGAACAGGTCTTG
STRAND : +
******************************
*** MATURE-3P ***
_________________________________________________________________________
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT REF 7 88674802 - 88674874
AGACCTACTTATCTACCAACAGC MATURE-3P 7 88674845 - 88674939 mmu-miR-1839-3p +
AAGGTAGATAGAACAGGTCTTG MATURE-5P 7 88674806 - 88674899 mmu-miR-1839-5p +
_________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................GACCTACTTATCTACCAACAG.......... read_115597_0_1_1_0_0_0 MATURE-3P 2 25.00 2 33.33 0 0.00 21
...........................................GACCTACTTATCTACCAACAGt......... read_309498_0_1_1_0_0_0 MATURE-3P 2 25.00 2 33.33 0 0.00 t 21
..............................................CTACTTATCTACCAACAG.......... read_275562_0_0_0_1_0_0 MATURE-3P 1 12.50 0 0.00 1 50.00 18
...........................................GACCTACTTATCTACCAACAGCt........ read_228698_0_1_0_0_0_0 MATURE-3P 1 12.50 1 16.67 0 0.00 t 22
...........................................GACCTACTTATCTACCAACAGC......... read_270391_0_0_0_0_0_1 MATURE-3P 1 12.50 0 0.00 1 50.00 22
...........................................GACCTACTTATCTACCAAC............ read_272352_1_0_0_0_0_0 MATURE-3P 1 12.50 1 16.67 0 0.00 19
---------- ---------- ----------
8 6 2
(75.00) (25.00)
*** MATURE-5P ***
_________________________________________________________________________
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT REF 7 88674802 - 88674874
AGACCTACTTATCTACCAACAGC MATURE-3P 7 88674845 - 88674939 mmu-miR-1839-3p +
AAGGTAGATAGAACAGGTCTTG MATURE-5P 7 88674806 - 88674899 mmu-miR-1839-5p +
_________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....AGGTAGATAGAACAGGTCTTGT................................................ read_393650_34_54_24_16_13_17 MATURE-5P 158 23.87 112 24.83 46 21.80 22
....AGGTAGATAGAACAGGTCTTG................................................. read_366102_22_37_29_24_10_19 MATURE-5P 141 21.30 88 19.51 53 25.12 21
....AGGTAGATAGAACAGGTCTTGa................................................ read_34011_9_20_11_7_7_6 MATURE-5P 60 9.06 40 8.87 20 9.48 a 21
.....GGTAGATAGAACAGGTCTTGT................................................ read_196052_19_14_6_1_6_6 MATURE-5P 52 7.85 39 8.65 13 6.16 21
.....GGTAGATAGAACAGGTCTTG................................................. read_74477_14_13_7_3_5_6 MATURE-5P 48 7.25 34 7.54 14 6.64 20
....AGGTAGATAGAACAGGTCTT.................................................. read_394384_7_6_4_0_2_5 MATURE-5P 24 3.63 17 3.77 7 3.32 20
.....GGTAGATAGAACAGGTCTTGa................................................ read_270184_4_4_2_0_4_2 MATURE-5P 16 2.42 10 2.22 6 2.84 a 20
....AGGTAGATAGAACAGGTCTTt................................................. read_370819_2_0_3_4_2_3 MATURE-5P 14 2.11 5 1.11 9 4.27 t 20
....AGGTAGATAGAACAGGTCTTa................................................. read_22617_2_1_4_1_0_0 MATURE-5P 8 1.21 7 1.55 1 0.47 a 20
....AGGTAGATAGAACAGGTCTTGTa............................................... read_163521_1_2_5_0_0_0 MATURE-5P 8 1.21 8 1.77 0 0.00 a 22
....AGGTAGATAGAAaAGGTCTTGT................................................ read_14337_3_0_2_0_0_1 MATURE-5P 6 0.91 5 1.11 1 0.47 12A9
.....GGTAGATAGAACAGGTCTTGaa............................................... read_143335_0_2_0_2_1_0 MATURE-5P 5 0.76 2 0.44 3 1.42 aa 20
.....GGTAGATAGAACAGGTCTTGTT............................................... read_49024_2_1_1_0_1_0 MATURE-5P 5 0.76 4 0.89 1 0.47 22
.....GGTAGATAGAACAGGTCTTGTa............................................... read_127131_0_2_1_0_1_0 MATURE-5P 4 0.60 3 0.67 1 0.47 a 21
....AGGTAGATAGAACAGGTCTTtt................................................ read_284370_0_1_1_0_1_1 MATURE-5P 4 0.60 2 0.44 2 0.95 tt 20
....AGGTAGATAGAACAGGTCT................................................... read_65780_1_1_0_1_1_0 MATURE-5P 4 0.60 2 0.44 2 0.95 19
....AGGTAGATAGAACAGGTCTTGaa............................................... read_39257_1_1_1_0_0_1 MATURE-5P 4 0.60 3 0.67 1 0.47 aa 21
....AGGTAGATAGAACAGGTCTTta................................................ read_165784_1_1_0_1_0_0 MATURE-5P 3 0.45 2 0.44 1 0.47 ta 20
....AGGTAGATAGAACAGGT..................................................... read_291976_0_0_0_1_2_0 MATURE-5P 3 0.45 0 0.00 3 1.42 17
....AGGTAGATAGAACAGGTCTTaa................................................ read_231342_2_0_1_0_0_0 MATURE-5P 3 0.45 3 0.67 0 0.00 aa 20
....AGGTAGATAGAACAGGTCTTGTT............................................... read_331869_1_1_1_0_0_0 MATURE-5P 3 0.45 3 0.67 0 0.00 23
....AGGTAGATAGAACAGGTCTTat................................................ read_234238_1_0_0_0_1_1 MATURE-5P 3 0.45 1 0.22 2 0.95 at 20
.....GGTAGATAGAACAGGTCTT.................................................. read_86986_0_1_0_0_0_2 MATURE-5P 3 0.45 1 0.22 2 0.95 19
.........GATAGAACAGGTCTTGT................................................ read_36154_0_0_0_1_0_2 MATURE-5P 3 0.45 0 0.00 3 1.42 17
....AGGTAGATAGAACAGGTCa................................................... read_82749_1_0_0_0_2_0 MATURE-5P 3 0.45 1 0.22 2 0.95 a 18
....AGGTAGATAGAACAGGTCTTGat............................................... read_107892_0_1_2_0_0_0 MATURE-5P 3 0.45 3 0.67 0 0.00 at 21
.....GGTAGATAGAACAGGTCT................................................... read_83801_0_1_0_1_0_1 MATURE-5P 3 0.45 1 0.22 2 0.95 18
....AGGTAGATAGAACAGGTCTTGTTT.............................................. read_224027_1_1_0_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 24
....AGGTAGATAGAACAaGTCTTGT................................................ read_375350_2_0_0_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 14A7
....AGGTAGATAGAACAGGcCTTGa................................................ read_221785_0_1_1_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 a 16C4
....AGGTAGATAGAAtAGGTCTTG................................................. read_216844_0_0_1_0_0_1 MATURE-5P 2 0.30 1 0.22 1 0.47 12T8
.....GGTAGATAGAACAGGTCTTGat............................................... read_33395_2_0_0_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 at 20
.....GGTAGATAGAACAGGTCTTt................................................. read_151127_0_2_0_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 t 19
....AGGTAGATAGAACAGGTCTTac................................................ read_314378_0_0_2_0_0_0 MATURE-5P 2 0.30 2 0.44 0 0.00 ac 20
.....GGTAGATAGAACAGGTCTTGTTT.............................................. read_385651_1_0_0_0_0_1 MATURE-5P 2 0.30 1 0.22 1 0.47 23
.....GGTAGATAGAACAGGTCTTta................................................ read_61686_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 ta 19
....AGGTAGATAGAACAGGcCTTG................................................. read_143924_0_0_0_1_0_0 MATURE-5P 1 0.15 0 0.00 1 0.47 16C4
....AGGTAGATAGAACAGGTCTTGTat.............................................. read_341402_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 at 22
....gGGTAGATAGAACAGGTCTTG................................................. read_143519_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 20
....AGtTAGATAGAACAGGTCTTGT................................................ read_166733_0_0_0_1_0_0 MATURE-5P 1 0.15 0 0.00 1 0.47 2T19
.....GGTAGATAGAACAGGTCcTGTTT.............................................. read_67545_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 17C5
....AGGTAGATAGAACAGGaCTTG................................................. read_244957_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 16A4
....AGGTAGATAGAAtAGGTCTTGT................................................ read_349136_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 12T9
.....GGTAGATAGAACAGGTCTTGc................................................ read_100953_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 c 20
.....GGTAGATAGAACAGGTCTTaa................................................ read_269334_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 aa 19
....AGGTAGATAGAAaAGGTCTT.................................................. read_172258_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 12A7
.....GGTAGATAGAACAGGTCTTa................................................. read_95501_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 19
....gGGTAGATAGAACAGGTCTTa................................................. read_311736_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 19
.....GGTAGATAGAACAGGTCTcg................................................. read_216435_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 cg 18
....AGGTAGATAGAAaAGGTCTTGa................................................ read_402571_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 12A8
....AGGTAGATAGAACAGGgCTTG................................................. read_336961_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 16G4
....AGGTAGATAGAACAGGTCTTtta............................................... read_4842_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 tta 20
....AGGTAGcTAGAACAGGTCTTGT................................................ read_369542_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 6C15
.....GGTAGATAGAACAGGTCTTtta............................................... read_403809_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 tta 19
....AGGTAGATAGAACAtGTCTTG................................................. read_126848_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 14T6
....AGGgAGATAGAACAGGTCTTGT................................................ read_214871_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 3G18
....AGGTAGATgGAACAGGTCTTGT................................................ read_380739_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 8G13
....AGGTAGATAGAAtAGGTCTTGc................................................ read_308211_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 c 12T8
....AGGTAGATAGAACAGGTCTTca................................................ read_216691_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 ca 20
....AGGTAGATAGAACAGGgCTTGa................................................ read_259206_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 16G4
....AGGaAGATAGAACAGGTCTTGT................................................ read_64271_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 3A18
........AGATAGAACAGGTCTTGT................................................ read_127147_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 18
....gGGTAGATAGAACAGGgCTTGT................................................ read_148628_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 15G5
...AAGGTAGATAGAACAGGTCT................................................... read_318810_0_0_0_1_0_0 MATURE-5P 1 0.15 0 0.00 1 0.47 20
....AGGTAGATAGAACAGGTCTTtaa............................................... read_73103_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 taa 20
....AGGTAGATAGAACAcGTCTTG................................................. read_139457_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 14C6
....AGGTAGgTAGAACAGGTCTTGa................................................ read_381275_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 6G14
.....GGTAGATAGAACAGGTCTTGagt.............................................. read_286230_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 agt 20
....AGGTAGATAGAACAGGTCTcg................................................. read_237318_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 cg 19
....AGGTAGATAGAACcGGTCTTGc................................................ read_110222_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 c 13C7
....AGGTAGATAGAACAGGTaTTGT................................................ read_313882_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 17A4
....AGGTAGATAGAACAGGTCTTGTgt.............................................. read_205918_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 gt 22
....AGGTAGATAGAACAGGcCTT.................................................. read_285779_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 16C3
...AAGGTAGATAGAACAGGTCTTGa................................................ read_110996_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 a 22
.....GGTAGATAGAACAGGTCTTGTat.............................................. read_237158_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 at 21
....AGGTAGgTAGAACAGGTCTTG................................................. read_27666_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 6G14
.....GGTAGATAGAACAGGTCTTtt................................................ read_350010_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 tt 19
....AGGTAGATAGAACAtGTCTTGT................................................ read_46100_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 14T7
.....GGTAGATAGAACAGGaCTTG................................................. read_34383_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 15A4
.....GGTAGATAGAACAGGTCTTaaa............................................... read_405863_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 aaa 19
.....GGTAGATAGAACAGGTCTTGTaa.............................................. read_133178_0_0_0_0_1_0 MATURE-5P 1 0.15 0 0.00 1 0.47 aa 21
....AGGTAGATAGAACAGGaCTT.................................................. read_328873_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 16A3
...AAGGTAGATAGAACAGGTaTT.................................................. read_358488_0_0_0_0_0_1 MATURE-5P 1 0.15 0 0.00 1 0.47 18A2
....AGGgAGATAGAACAGGTCTTG................................................. read_314827_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 3G17
....AGGTAGATAGAACAGGTC.................................................... read_72261_0_0_0_0_1_0 MATURE-5P 1 0.15 0 0.00 1 0.47 18
.....GGTAGATAGAACAGcTCTTG................................................. read_22055_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 14C5
....AGGTAGATAGAACAGGgCTTGT................................................ read_334817_0_0_1_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 16G5
....AGGTAGATAGAACAGGTtTTG................................................. read_109405_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 17T3
...AAGGTAGATAGAACAGGTCTT.................................................. read_24326_1_0_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 21
....AGGTAGATAGAACAGGTCTTGaat.............................................. read_10962_0_1_0_0_0_0 MATURE-5P 1 0.15 1 0.22 0 0.00 aat 21
---------- ---------- ----------
662 451 211
(68.13) (31.87)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 6 2 8 1.19%
MATURE-5P 451 211 662 98.81%
---------- ---------- ----------
457 213 670
[END]