[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-181d
DESCRIPTION        : mmu-mir-181d MI0005450 Mus musculus miR-181d stem-loop
CHROMOSOME         : 8
SPAN               : 86702615 - 86702686
LENGTH             : 72
SEQUENCE           : ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT
OVERHANG THRESHOLD : 75%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-181d
ACCID      : MI0005450
PARENT     : mmu-mir-181d
CHROMOSOME : 8
START      : 86702615
STOP       : 86702686
OFFSET     : 7..29
SEQUENCE   : AACATTCATTGTTGTCGGTGGGT
STRAND     : -
******************************



*** MATURE ***
________________________________________________________________________
ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT REF                  8                    86702615 - 86702686  
      AACATTCATTGTTGTCGGTGGGT                                            MATURE               8                    86702622 - 86702715  mmu-miR-181d         -                    
________________________________________________________________________

                                                                    -SEQ-                            -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......ACATTCATTGTTGTCGGTGGGT............................................   read_234339_110_131_99_17_24_37       MATURE          418        43.23          340        43.65           78        41.49                        22   
.......ACATTCATTGTTGTCGGTGGGTT...........................................       read_36954_32_64_39_10_14_9       MATURE          168        17.37          135        17.33           33        17.55                        23   
.......ACATTCATTGTTGTCGGTGGG.............................................        read_321036_25_20_21_5_6_6       MATURE           83         8.58           66         8.47           17         9.04                        21   
.......ACATTCATTGTTGTCGGTGG..............................................         read_252327_10_14_5_1_2_4       MATURE           36         3.72           29         3.72            7         3.72                        20   
.......ACATTCATTGTTGTCGGTGGGTTt..........................................         read_402379_2_11_11_1_5_5       MATURE           35         3.62           24         3.08           11         5.85            t           23   
.......ACATTCATTGTTGTCGGTGGGa............................................           read_46665_9_11_8_1_2_0       MATURE           31         3.21           28         3.59            3         1.60            a           21   
.......ACATTCATTGTTGTCGGTGGGTa...........................................           read_161161_3_5_4_0_1_0       MATURE           13         1.34           12         1.54            1         0.53            a           22   
.......ACATTCATTGTTGTCGtTGGGT............................................           read_197367_2_3_3_2_1_0       MATURE           11         1.14            8         1.03            3         1.60                      16T5   
.......ACATTCATTGTTGTaGGTGGGT............................................            read_45983_8_0_1_0_0_0       MATURE            9         0.93            9         1.16            0         0.00                      14A7   
.......ACATTCATTGTTGTCGGT................................................           read_117549_1_2_0_1_1_4       MATURE            9         0.93            3         0.39            6         3.19                        18   
.......ACATTCATTGTTGTCGGTGGGTat..........................................           read_301074_4_2_2_0_0_0       MATURE            8         0.83            8         1.03            0         0.00           at           22   
.......ACATTCATTGTTtTCGGTGGGT............................................           read_263673_0_2_3_0_1_1       MATURE            7         0.72            5         0.64            2         1.06                      12T9   
.......ACATTCATTGTTGTCGGTGGa.............................................           read_100730_0_2_3_0_0_1       MATURE            6         0.62            5         0.64            1         0.53            a           20   
.......ACATTCATTGTTGTCGGTGGtt............................................           read_372611_2_3_1_0_0_0       MATURE            6         0.62            6         0.77            0         0.00           tt           20   
.......ACATTCATTGTTGTCGGTGtGT............................................            read_29571_1_3_1_0_0_0       MATURE            5         0.52            5         0.64            0         0.00                      19T2   
.......ACATTCATTGTTGTCGGTGt..............................................           read_186049_2_1_1_0_1_0       MATURE            5         0.52            4         0.51            1         0.53            t           19   
.......ACATTCATTGTTGTCGGTGGGTaa..........................................           read_323109_0_1_2_0_1_0       MATURE            4         0.41            3         0.39            1         0.53           aa           22   
.......ACATTCATTGTTGTCGGTGtGTT...........................................            read_31634_0_0_2_2_0_0       MATURE            4         0.41            2         0.26            2         1.06                      19T3   
.......ACATTCATTGTTtTCGGTGGGTT...........................................             read_6681_2_0_0_0_0_2       MATURE            4         0.41            2         0.26            2         1.06                     12T10   
.......ACATTCATTGTTGTCGGTGGGc............................................           read_273427_3_0_1_0_0_0       MATURE            4         0.41            4         0.51            0         0.00            c           21   
.......ACATTCATTGTTGTCGGTGGtTT...........................................           read_203805_0_0_2_0_1_1       MATURE            4         0.41            2         0.26            2         1.06                      20T2   
.......ACATTCATTGTTGTCGGTGGGTTa..........................................           read_398571_1_1_1_0_0_1       MATURE            4         0.41            3         0.39            1         0.53            a           23   
.......ACATTCATTGTTGTCGGTGGGTTG..........................................           read_409228_1_1_1_0_0_0       MATURE            3         0.31            3         0.39            0         0.00                        24   
.......ACATTCATTGTTGTCtGTGGGT............................................            read_30999_0_0_3_0_0_0       MATURE            3         0.31            3         0.39            0         0.00                      15T6   
.......ACATTCATTGTTGTCGGTtGGT............................................           read_162142_1_0_2_0_0_0       MATURE            3         0.31            3         0.39            0         0.00                      18T3   
.......ACATTCATTGTTGTCGGTtGGTT...........................................           read_203440_0_2_1_0_0_0       MATURE            3         0.31            3         0.39            0         0.00                      18T4   
.......ACATTCATTGTTGTCGcTGGGT............................................           read_237922_2_0_0_0_0_0       MATURE            2         0.21            2         0.26            0         0.00                      16C5   
.......ACATTCATTGTTGTCGGTGGGaa...........................................           read_223698_2_0_0_0_0_0       MATURE            2         0.21            2         0.26            0         0.00           aa           21   
.......ACATTCATTGTTGTaGGTGG..............................................           read_264544_2_0_0_0_0_0       MATURE            2         0.21            2         0.26            0         0.00                      14A5   
.......ACATTCATTGTTGTCGGTGa..............................................            read_75505_1_0_1_0_0_0       MATURE            2         0.21            2         0.26            0         0.00            a           19   
.......ACATTCATTGTTGTCGGTGGGat...........................................           read_360241_1_0_1_0_0_0       MATURE            2         0.21            2         0.26            0         0.00           at           21   
.......ACATTCATTGTTGTaGGTGGG.............................................           read_295102_1_0_1_0_0_0       MATURE            2         0.21            2         0.26            0         0.00                      14A6   
.......ACATTCATTGTTGTCGGTGGaa............................................           read_243886_1_0_1_0_0_0       MATURE            2         0.21            2         0.26            0         0.00           aa           20   
......AACATTCATTGTTGTCGGTGG..............................................           read_180168_1_0_0_1_0_0       MATURE            2         0.21            1         0.13            1         0.53                        21   
.......ACATTCATTGTTGTCGGTGGt.............................................           read_337555_1_1_0_0_0_0       MATURE            2         0.21            2         0.26            0         0.00            t           20   
.......ACATTCATTGTTGTCGGTG...............................................           read_303324_1_0_0_0_0_1       MATURE            2         0.21            1         0.13            1         0.53                        19   
.......ACATTCATTGTTGTCGGTtg..............................................           read_337618_0_0_1_0_1_0       MATURE            2         0.21            1         0.13            1         0.53           tg           18   
.......ACATTCATTGTTtTCGGTGGGTTt..........................................           read_193396_0_1_0_1_0_0       MATURE            2         0.21            1         0.13            1         0.53            t        12T10   
.......ACATTCATTGTTGTCGGTGtg.............................................           read_170291_1_1_0_0_0_0       MATURE            2         0.21            2         0.26            0         0.00           tg           19   
.......ACATTCATTGTTGTCGGTGGtTTt..........................................           read_116525_1_0_1_0_0_0       MATURE            2         0.21            2         0.26            0         0.00            t         20T2   
.......ACATTCATTGTTGaCGGTGG..............................................           read_350747_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      13A6   
.......cCATTCATTGTTGTCGGTGGGT............................................           read_316668_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                        21   
.......ACATTCATTGTTGTCGGaGGGa............................................           read_177354_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a         17A3   
.......ACATTCATTGTTGTCGGTGGGTaat.........................................           read_374139_0_0_0_0_1_0       MATURE            1         0.10            0         0.00            1         0.53          aat           22   
.......ACATTCATTGgTGTCGGTGGGT............................................           read_326481_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                     10G11   
.......ACATTCATTGTTGTCGtTGGGTT...........................................           read_170706_0_0_0_1_0_0       MATURE            1         0.10            0         0.00            1         0.53                      16T6   
.......ACATTCATTGTTGTCGGgGGGTTt..........................................           read_198315_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            t         17G5   
.......ACATTCATTGTTGaCGGTGGGT............................................             read_8424_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      13A8   
........CATTCATTGTTGTCGGTGGG.............................................           read_196847_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                        20   
.......ACATTCATTGTTGTaGGTGGGTa...........................................            read_42478_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a         14A7   
.......ACATTCATTGTTGTCGGTtGG.............................................           read_381313_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      18T2   
.......ACATTCATTGTTGTCGGTGGGaaa..........................................           read_334718_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53          aaa           21   
.......ACATTCATTGTTGTCGGTGGGTTtt.........................................            read_16996_0_0_0_1_0_0       MATURE            1         0.10            0         0.00            1         0.53           tt           23   
.......ACATTCATTGTTGTCGGTGGaat...........................................           read_282901_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00          aat           20   
.......ACATTCATTGTTGTCGGgGGGT............................................           read_302395_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17G4   
.......ACATTCtTTGTTGTCGGTGGGT............................................           read_218245_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53                      6T15   
.......ACATTCATTGTTGTCGGTGGGTg...........................................           read_196060_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            g           22   
...........TCATTGTTGTCGGTGGGTT...........................................           read_390013_0_0_0_0_1_0       MATURE            1         0.10            0         0.00            1         0.53                        19   
.......ACATcCATTGTTGTCGGTGGGT............................................           read_321282_0_0_0_0_1_0       MATURE            1         0.10            0         0.00            1         0.53                      4C17   
.......ACATTCATTGTTGTCGGTGtgat...........................................           read_342435_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00         tgat           19   
.......ACATTCATTGTTGTCGGTGtGTat..........................................           read_395313_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00           at         19T2   
.......ACATTCATTGTTGTCcGTGGGTT...........................................           read_239173_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      15C7   
.......ACATTCATTGTTtTCGGTGGGTa...........................................           read_132851_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a         12T9   
.......ACATTCATTGTTGTCtGTGGGa............................................            read_21066_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a         15T5   
.......ACATTCATTGTTGTCGGTttg.............................................           read_218660_0_0_0_0_1_0       MATURE            1         0.10            0         0.00            1         0.53          ttg           18   
.......ACATTCATTGTTGTCGGgGG..............................................           read_265183_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17G2   
.......ACATTaATTGTTGTCGGTGGGT............................................            read_30409_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      5A16   
.......ACATTCATTGTTaTCGGTGGGT............................................           read_409703_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      12A9   
.......ACATTCATTGTTGcCGGTGG..............................................           read_159967_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      13C6   
.......gCATTCATTGTTGTCGGTGGa.............................................            read_48741_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a           19   
.......gCATTCATTGTTGTCGGTGGGTTt..........................................           read_363990_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53            t           22   
.......ACATTCATTGTcGTCGGTGGGT............................................           read_293382_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                     11C10   
.......ACATTCATTGTTGTCGGTGcta............................................           read_258234_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53          cta           19   
.......ACATTCATTGTTGTCGaTGGGT............................................           read_122994_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      16A5   
.......ACATTaATTGTTGTCGGTGG..............................................             read_5313_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53                      5A14   
.......ACATTCATTGTTGTCGGTGGGg............................................             read_9539_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            g           21   
.......ACATTCATTGTTGTCGGaGGGT............................................           read_402400_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17A4   
.......ACATTCATTGTTGTCGGcGGGT............................................           read_287817_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17C4   
......AACATTCATTGTTGTCGGTGGGT............................................           read_128148_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                        23   
.......ACATTCgTTGTTGTCGGTGGGa............................................            read_25481_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            a         6G14   
.......gCATTCATTGTTGTCGGTGGGTT...........................................           read_188972_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                        22   
.......ACATTCATTcTTGTCGGTGGGTTt..........................................           read_278687_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00            t         9C13   
.......ACAcTCATTGTTGTCGGTGGG.............................................            read_76412_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      3C17   
.......ACATTCgTTGTTGTCGGTGGGTT...........................................           read_334964_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      6G16   
.......ACATTCATTGTTGTtGGTGGGT............................................           read_401579_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      14T7   
......AACATTCATTGTTtTCGGTGGGT............................................            read_41518_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      13T9   
.......gCATTCATTGTTGTCGGTGGGT............................................           read_330473_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                        21   
.......ACATTCATTGTTGTCGGgGGGTT...........................................            read_56289_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17G5   
.......ACATTCATTGTTGTaGGTGGGTT...........................................           read_314252_1_0_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      14A8   
.......ACATTCATTGTTGTCGGaGGGTT...........................................           read_335949_0_1_0_0_0_0       MATURE            1         0.10            1         0.13            0         0.00                      17A5   
.......ACATTCATTGTTGTCGGTttt.............................................           read_306692_0_0_1_0_0_0       MATURE            1         0.10            1         0.13            0         0.00          ttt           18   
.......ACATTCATgGTTGTCGGTGGG.............................................           read_350365_0_0_0_0_1_0       MATURE            1         0.10            0         0.00            1         0.53                      8G12   
.......ACATTCATTGTTGTCGGcGGGa............................................           read_232041_0_0_0_0_0_1       MATURE            1         0.10            0         0.00            1         0.53            a         17C3   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                  967                       779                       188                                          
                                                                                                                                                        (80.56)                   (19.44)                                       




*** OTHER ***
________________________________________________________________________
ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT REF                  8                    86702615 - 86702686  
      AACATTCATTGTTGTCGGTGGGT                                            MATURE               8                    86702622 - 86702715  mmu-miR-181d         -                    
________________________________________________________________________

                                                                    -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................CACCGGGGGATGAATGTCAt....   read_275245_0_0_1_0_0_0        OTHER            1        50.00            1        50.00            0            0            t           19   
.................................................CACCGGGGGATGAATGTCA.....   read_357340_1_0_0_0_0_0        OTHER            1        50.00            1        50.00            0            0                        19   
                                                                                                                   ----------                ----------                ----------   
                                                                                                                            2                         2                         0                                          
                                                                                                                                               (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             779             188             967          99.79%
          OTHER               2               0               2           0.21%
                     ----------      ----------      ----------                
                            781             188             969                



[END]
