[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************
ID : mmu-mir-149
DESCRIPTION : mmu-mir-149 MI0000171 Mus musculus miR-149 stem-loop
CHROMOSOME : 1
SPAN : 94746955 - 94747020
LENGTH : 66
SEQUENCE : GGCTCTGGCTCCGTGTCTTCACTCCCGTGTTTGTCCGAGGAGGGAGGGAGGGACGGGGGCGGTGCT
OVERHANG THRESHOLD : 75%
***************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-149
ACCID : MI0000171
PARENT : mmu-mir-149
CHROMOSOME : 1
START : 94746955
STOP : 94747020
OFFSET : 4..26
SEQUENCE : TCTGGCTCCGTGTCTTCACTCCC
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________
GGCTCTGGCTCCGTGTCTTCACTCCCGTGTTTGTCCGAGGAGGGAGGGAGGGACGGGGGCGGTGCT REF 1 94746955 - 94747020
TCTGGCTCCGTGTCTTCACTCCC MATURE 1 94746959 - 94747046 mmu-miR-149 +
__________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....CTGGCTCCGTGTCTTCACTCC.......................................... read_221225_120_135_73_41_67_44 MATURE 480 22.64 328 25.08 152 18.72 21
....CTGGCTCCGTGTCTTCACTCCC......................................... read_246797_112_136_47_30_37_35 MATURE 397 18.73 295 22.55 102 12.56 22
....CTGGCTCCGTGTCTTCACT............................................ read_96335_61_80_29_48_59_55 MATURE 332 15.66 170 13.00 162 19.95 19
....CTGGCTCCGTGTCTTCACTC........................................... read_105979_47_53_27_44_44_49 MATURE 264 12.45 127 9.71 137 16.87 20
....CTGGCTCCGTGTCTTCACTCCCt........................................ read_231319_23_36_15_11_16_17 MATURE 118 5.57 74 5.66 44 5.42 t 22
....CTGGCTCCGTGTCTTCACTCt.......................................... read_254670_17_18_9_10_11_14 MATURE 79 3.73 44 3.36 35 4.31 t 20
....CTGGCTCCGTGTCTTCACTCa.......................................... read_55169_23_19_10_5_9_5 MATURE 71 3.35 52 3.98 19 2.34 a 20
....CTGGCTCCGTGTCTTCACTCCt......................................... read_174239_11_8_5_4_6_6 MATURE 40 1.89 24 1.83 16 1.97 t 21
....CTGGCTCCGTGTCTTCACTCCCa........................................ read_265253_8_5_1_1_3_3 MATURE 21 0.99 14 1.07 7 0.86 a 22
....CTGGCTCCGTGTCTTCAC............................................. read_238480_3_2_1_7_6_1 MATURE 20 0.94 6 0.46 14 1.72 18
....CTGGCTCCGTGTCTTCACTCCCtt....................................... read_322576_4_3_4_2_2_2 MATURE 17 0.80 11 0.84 6 0.74 tt 22
....CTGGCTCCGTGTCTTCACTCCa......................................... read_389921_2_3_2_2_3_5 MATURE 17 0.80 7 0.54 10 1.23 a 21
....CTGGCTCCGTGTCTTCACTCCtt........................................ read_62790_2_2_2_1_4_2 MATURE 13 0.61 6 0.46 7 0.86 tt 21
....CTGGCTCCGTGTCTTCACTt........................................... read_169236_3_2_1_0_1_3 MATURE 10 0.47 6 0.46 4 0.49 t 19
....CTGGCTCCGTGTCTTCACTa........................................... read_297477_3_1_1_1_3_0 MATURE 9 0.42 5 0.38 4 0.49 a 19
....CTGGCTCCGTGTCTTCACa............................................ read_47754_0_2_3_0_3_1 MATURE 9 0.42 5 0.38 4 0.49 a 18
......GGCTCCGTGTCTTCACT............................................ read_12075_2_0_1_1_1_2 MATURE 7 0.33 3 0.23 4 0.49 17
....CTGGCTCCGTGTCTaCACTCC.......................................... read_208803_7_0_0_0_0_0 MATURE 7 0.33 7 0.54 0 0.00 14A6
....CTGGCTCCGTGTCTTCACTat.......................................... read_269840_1_1_0_3_1_1 MATURE 7 0.33 2 0.15 5 0.62 at 19
....CTGGCTCCGTGTCTTCACTCCCttt...................................... read_86762_1_3_2_0_0_0 MATURE 6 0.28 6 0.46 0 0.00 ttt 22
....CTGGCTCCGTGTCTTCACTCCCG........................................ read_215871_4_1_1_0_0_0 MATURE 6 0.28 6 0.46 0 0.00 23
....CTGGCTCCGTGTCTTCACTCCCat....................................... read_131542_1_0_0_1_2_2 MATURE 6 0.28 1 0.08 5 0.62 at 22
....CTGGCTCCGTGTaTTCACTCCC......................................... read_100831_2_2_1_0_0_0 MATURE 5 0.24 5 0.38 0 0.00 12A9
....CTGGCTCCGTGTCTTCACTtt.......................................... read_300309_2_1_0_0_0_2 MATURE 5 0.24 3 0.23 2 0.25 tt 19
....CTGGCTCCGTGTCTTCA.............................................. read_397584_1_1_0_0_1_2 MATURE 5 0.24 2 0.15 3 0.37 17
......GGCTCCGTGTCTTCACTCC.......................................... read_315149_1_1_1_0_2_0 MATURE 5 0.24 3 0.23 2 0.25 19
....CTGGCTCCGTGTCTaCACTCCC......................................... read_294673_5_0_0_0_0_0 MATURE 5 0.24 5 0.38 0 0.00 14A7
....CTGGCTCCGTGTCTTCACTag.......................................... read_248304_1_1_1_0_1_0 MATURE 4 0.19 3 0.23 1 0.12 ag 19
....CTGGCTCCGTGTCTTCACTCtt......................................... read_330349_0_1_0_2_0_1 MATURE 4 0.19 1 0.08 3 0.37 tt 20
......GGCTCCGTGTCTTCACTCCC......................................... read_261310_1_1_1_0_1_0 MATURE 4 0.19 3 0.23 1 0.12 20
....CTGGCTCCGTGTCTTCACTCtc......................................... read_327738_0_2_0_0_1_1 MATURE 4 0.19 2 0.15 2 0.25 tc 20
....CTGGCTCCGTGTCTTCACTCCttt....................................... read_44161_2_0_0_1_1_0 MATURE 4 0.19 2 0.15 2 0.25 ttt 21
....CTGGCTCCGTGTCTaCACTC........................................... read_178362_4_0_0_0_0_0 MATURE 4 0.19 4 0.31 0 0.00 14A5
....CTGGCTCCGTGTCTTCACTCat......................................... read_104108_0_0_1_0_0_3 MATURE 4 0.19 1 0.08 3 0.37 at 20
....CTGGCTCCGTGTCTTCACTCCg......................................... read_128155_0_0_0_1_0_2 MATURE 3 0.14 0 0.00 3 0.37 g 21
....CTGGCTCCGTGTCTTCACTCg.......................................... read_393657_1_1_1_0_0_0 MATURE 3 0.14 3 0.23 0 0.00 g 20
....CTGGCTCCGTGTCTTCACTCCat........................................ read_211702_2_0_0_0_1_0 MATURE 3 0.14 2 0.15 1 0.12 at 21
....CTGGCTCCGTGTCTTCcCTCC.......................................... read_170236_0_2_0_0_0_1 MATURE 3 0.14 2 0.15 1 0.12 16C4
....aTGGCTCCGTGTCTTCACTCCC......................................... read_255897_1_0_2_0_0_0 MATURE 3 0.14 3 0.23 0 0.00 21
....CTGGCTCCGTGTCTTCcCTCCC......................................... read_179720_1_0_0_1_1_0 MATURE 3 0.14 1 0.08 2 0.25 16C5
......GGCTCCGTGTCTTCACTCCCt........................................ read_89550_0_2_0_0_1_0 MATURE 3 0.14 2 0.15 1 0.12 t 20
....CTGGCcCCGTGTCTTCACTCC.......................................... read_206326_0_1_0_0_1_1 MATURE 3 0.14 1 0.08 2 0.25 5C15
....CTGtCTCCGTGTCTTCACTCCC......................................... read_38829_1_0_0_1_1_0 MATURE 3 0.14 1 0.08 2 0.25 3T18
....CTGGCTCCGTGTCTTCACTatt......................................... read_90956_2_0_0_0_1_0 MATURE 3 0.14 2 0.15 1 0.12 att 19
....CTGGCTCCGTGTCTTCACTaa.......................................... read_256702_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.25 aa 19
....CTGGCTCCGTGTCTTCACTCCCaaa...................................... read_70347_1_1_0_0_0_0 MATURE 2 0.09 2 0.15 0 0.00 aaa 22
....CTGGCTCCGTGTCTTCACTCta......................................... read_367450_0_0_2_0_0_0 MATURE 2 0.09 2 0.15 0 0.00 ta 20
....CTGGCTCCGTGTCTTCACTCaat........................................ read_56867_0_0_1_1_0_0 MATURE 2 0.09 1 0.08 1 0.12 aat 20
....CTGGCTCCGTGcCTTCACTC........................................... read_256597_0_0_0_1_1_0 MATURE 2 0.09 0 0.00 2 0.25 11C8
....CTGGCTCCGTGTCTTCACaa........................................... read_162508_1_1_0_0_0_0 MATURE 2 0.09 2 0.15 0 0.00 aa 18
....CTGGCTCCGTGTCTTCACTCCCta....................................... read_270273_1_0_0_0_0_1 MATURE 2 0.09 1 0.08 1 0.12 ta 22
....CTGGCTCCGTGTCTTCACTCCatt....................................... read_232578_1_0_0_0_0_1 MATURE 2 0.09 1 0.08 1 0.12 att 21
....CTGGCTCCGTGTCTTCACTCaa......................................... read_26668_0_1_0_1_0_0 MATURE 2 0.09 1 0.08 1 0.12 aa 20
....CTGGCTCCGTGTCTTCACTaaaa........................................ read_227392_1_0_0_0_0_1 MATURE 2 0.09 1 0.08 1 0.12 aaaa 19
....CTGGCTCCGTGTCTgCACTCCCt........................................ read_212390_2_0_0_0_0_0 MATURE 2 0.09 2 0.15 0 0.00 t 14G7
....CTGGCTCCGTGTtTTCACTCCC......................................... read_234099_0_0_1_0_0_1 MATURE 2 0.09 1 0.08 1 0.12 12T9
....CTGGCTCCGTGTCTTCACTCttt........................................ read_119379_1_0_0_0_1_0 MATURE 2 0.09 1 0.08 1 0.12 ttt 20
....CTGGCTCCGTGTCTTCACcCC.......................................... read_261691_1_0_0_1_0_0 MATURE 2 0.09 1 0.08 1 0.12 18C2
....CTGGCTCCGTGTCTTCACTta.......................................... read_328245_0_0_0_0_2_0 MATURE 2 0.09 0 0.00 2 0.25 ta 19
....CTGtCTCCGTGTCTTCACTC........................................... read_47872_1_0_0_1_0_0 MATURE 2 0.09 1 0.08 1 0.12 3T16
....CTGGCTCCGTGTCTTCACTCCCc........................................ read_404976_1_0_0_1_0_0 MATURE 2 0.09 1 0.08 1 0.12 c 22
....CTGGCTCCGTGTCTTCACg............................................ read_211270_0_0_0_0_1_1 MATURE 2 0.09 0 0.00 2 0.25 g 18
....CTGGCTCCGTGTCTgCACTCC.......................................... read_109455_2_0_0_0_0_0 MATURE 2 0.09 2 0.15 0 0.00 14G6
....aTGGCTCCGTGTCTTCACT............................................ read_80365_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 18
....CTGGCTCCGTGTCTaCACTCCCa........................................ read_198392_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 a 14A7
....CTGGCTCCGTGTCTTCACTagt......................................... read_280996_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 agt 19
....CTGGCTCCGTGTCTTCACTCCtag....................................... read_194405_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 tag 21
....CTGGCTCCGTGTCTTCACc............................................ read_191973_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 c 18
....CTGGCTtCGTGTCTTCACTCCCt........................................ read_148745_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 6T15
.......GCTCCGTGTCTTCACTCCCt........................................ read_379276_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 t 19
....CTGGCTCCGTGTCTTCACTCgt......................................... read_297300_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 gt 20
....CTGGCTCCGTGTCTTtACTC........................................... read_99853_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 15T4
....CTGGCTCCGTGTCTTCACTCaag........................................ read_145755_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 aag 20
....CTGGCTCCtTGTCTTCACTCCCtt....................................... read_171297_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 tt 8T13
....CTGGCTCCGTGTCTcCACTCCC......................................... read_43383_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 14C7
....CTGGCTCCGTGTCTTCACTCCCtTG...................................... read_135565_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 22T2
....CTGGCTCCGTGTCTTCACTtat......................................... read_372857_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 tat 19
....CTGGCTCCGTGTCTTCACTCtagt....................................... read_58205_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 tagt 20
....CTGGCTCCGTGTCTTCACTgaa......................................... read_214500_0_0_0_1_0_0 MATURE 1 0.05 0 0.00 1 0.12 gaa 19
....CTGGCTCCGTGTCTTtACTCC.......................................... read_233046_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 15T5
....CTGGCgCCGTGTCTTCACTCCCt........................................ read_18493_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 5G16
....CTGGCTCCGTGTCTTCACat........................................... read_167822_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 at 18
....CTGGCTCtGTGTCTTCACTCCCt........................................ read_404921_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 t 7T14
.........TCCGTGTCTTCACTCCC......................................... read_404956_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 17
....CTGGCTCCGTGTCTTCAaTCC.......................................... read_314027_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 17A3
....CTGGCTCCGTGTaTTCACTCCCt........................................ read_409924_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 12A9
....CTGGCTCCGTGTCTTCACTCgc......................................... read_76049_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 gc 20
....CTGGCTCCGTGTCTTCACcCCCt........................................ read_198784_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 18C3
....CTGGCTCCGTGTCTTCACTCCCatt...................................... read_369917_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 att 22
....CTGGCTCCGTGTCTTCACcc........................................... read_281437_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 cc 18
....CTGGCTCCGTGTCTTCACTttc......................................... read_22765_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 ttc 19
....CTGGCTCCGTGTCTTCACTCCCtat...................................... read_83526_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 tat 22
....CTGGCTCCGTGTCTTCACTCaga........................................ read_185855_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 aga 20
....gTGGCTCCGTGTCTTCACTCC.......................................... read_211729_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 20
....CTGGCTCCGTGTaTTCACTCC.......................................... read_128554_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 12A8
....CTGGCTCCGTGTtTTCACTCC.......................................... read_33262_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 12T8
....CTGGCTCCGTGTCTTCACTCga......................................... read_38509_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 ga 20
....CTGGCTCCGaGTCTTCACTCCC......................................... read_155199_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 9A12
......GGCTCCGTGTCTTCACTCCg......................................... read_242549_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 g 19
....aTGGCTCCGTGTCTTCACTCC.......................................... read_331258_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 20
....CTGGCTCCGTGTCTTCACTacttt....................................... read_339347_0_0_0_1_0_0 MATURE 1 0.05 0 0.00 1 0.12 acttt 19
....gTGGCTCCGTGTCTTCACT............................................ read_282127_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 18
....CTGGCTCCGTGTCTTCAtTCCC......................................... read_113841_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 17T4
....CTGGCTCCGTGcCTTCACTCCC......................................... read_286397_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 11C10
....tTGGCTCCGTGTCTTCACTCCC......................................... read_44495_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 21
....CTGGCTCCGTGTCTTCACTtc.......................................... read_386553_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 tc 19
....aTGGCTCCGTGTCTTCACTC........................................... read_337953_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 19
....CTGGCTCCGTGTCTTCACgCCa......................................... read_225862_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 a 18G2
....CTGGCTCCGTcTCTTCACTCCCttt...................................... read_206560_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 ttt 10C11
....CTGGCTCCGTGTCTcCACTCC.......................................... read_75653_0_0_0_1_0_0 MATURE 1 0.05 0 0.00 1 0.12 14C6
....CTGGCTtCGTGTCTTCACTC........................................... read_217073_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 6T13
....CTGGCTCCGTGTCTTCACTCCCaa....................................... read_357292_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 aa 22
....CTGGCTCCGTGTtTTCACTC........................................... read_390698_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 12T7
....CTGGCTCCGTGTCTaCACTCCCt........................................ read_312395_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 14A7
......GGCTCCGTGTCTTCACTCa.......................................... read_59731_0_1_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 a 18
....CTGGtTCCGTGTCTTCACTC........................................... read_258199_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 4T15
....CTGGCTCCGTGTCTTCACTCatt........................................ read_308450_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 att 20
......GGCTCCGTGTCTTCACTC........................................... read_33906_0_0_0_1_0_0 MATURE 1 0.05 0 0.00 1 0.12 18
.....TGGCTCCGTGTCTTCACTCa.......................................... read_131364_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 a 19
....CTGGCTCCGTGTCTTCACTCCCGTt...................................... read_65717_0_0_1_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 t 24
....CTGGCTCCGTGTCTgCACTCCC......................................... read_166105_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 14G7
....CTGGCTCCGTGTCTTCACTCtat........................................ read_240436_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 tat 20
....CTGGCTCCGTGTCTTCACTCac......................................... read_331147_0_0_0_0_1_0 MATURE 1 0.05 0 0.00 1 0.12 ac 20
....CTGGCTCCGTGTCTTCACTaag......................................... read_192813_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.12 aag 19
....tTGGCTCCGTGTCTTCACTCC.......................................... read_97328_1_0_0_0_0_0 MATURE 1 0.05 1 0.08 0 0.00 20
....CTGGCTCCGTGTCcTCACTCCC......................................... read_143154_0_0_0_1_0_0 MATURE 1 0.05 0 0.00 1 0.12 13C8
---------- ---------- ----------
2120 1308 812
(61.70) (38.30)
*** OTHER ***
__________________________________________________________________
GGCTCTGGCTCCGTGTCTTCACTCCCGTGTTTGTCCGAGGAGGGAGGGAGGGACGGGGGCGGTGCT REF 1 94746955 - 94747020
TCTGGCTCCGTGTCTTCACTCCC MATURE 1 94746959 - 94747046 mmu-miR-149 +
__________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................AGGGAGGGACGGGGGCGGccg.. read_120759_0_0_1_0_0_0 OTHER 1 50.00 1 50.00 0 0 ccg 18
.............................................GGGAGGGACGGGGGCGGTG... read_73410_1_0_0_0_0_0 OTHER 1 50.00 1 50.00 0 0 19
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1308 812 2120 99.91%
OTHER 2 0 2 0.09%
---------- ---------- ----------
1310 812 2122
[END]