[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-148b
DESCRIPTION : mmu-mir-148b MI0000617 Mus musculus miR-148b stem-loop
CHROMOSOME : 15
SPAN : 103115556 - 103115652
LENGTH : 97
SEQUENCE : CAGGCACCCTTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTA
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************
TARGET
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CATEGORY : MATURE
ID : mmu-miR-148b
ACCID : MI0000617
PARENT : mmu-mir-148b
CHROMOSOME : 15
START : 103115556
STOP : 103115652
OFFSET : 61..82
SEQUENCE : TCAGTGCATCACAGAACTTTGT
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________________________
CAGGCACCCTTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTA REF 15 103115556 - 103115652
TCAGTGCATCACAGAACTTTGT MATURE 15 103115617 - 103115734 mmu-miR-148b +
_________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................CAGTGCATCACAGAACTTTGT................ read_117433_119_125_82_29_50_47 MATURE 452 77.93 326 75.99 126 83.44 21
.............................................................CAGTGCATCACAGAACTTTG................. read_331190_24_21_12_2_4_6 MATURE 69 11.90 57 13.29 12 7.95 20
.............................................................CAGTGCATCACAGAACTTTGa................ read_226483_4_2_2_0_0_1 MATURE 9 1.55 8 1.86 1 0.66 a 20
.............................................................CAGTGCATCACAGAACTTT.................. read_368662_0_0_2_1_0_1 MATURE 4 0.69 2 0.47 2 1.32 19
.............................................................CAGTGCATCACAGAgCTTTGT................ read_171807_3_0_1_0_0_0 MATURE 4 0.69 4 0.93 0 0.00 14G6
.............................................................CAGTGCATCACAGAACT.................... read_71013_0_1_0_1_1_0 MATURE 3 0.52 1 0.23 2 1.32 17
.................................................................GCATCACAGAACTTTGT................ read_39511_0_1_0_0_1_1 MATURE 3 0.52 1 0.23 2 1.32 17
.............................................................CAGTGCATCACAGAACTTTGTC............... read_40187_2_1_0_0_0_0 MATURE 3 0.52 3 0.70 0 0.00 22
.............................................................CAGTGCATCACAGAACTTTGTtg.............. read_245417_0_2_0_0_0_1 MATURE 3 0.52 2 0.47 1 0.66 tg 21
.............................................................CAGTGCATCACAGAACTTTGTa............... read_182825_0_1_0_0_0_1 MATURE 2 0.34 1 0.23 1 0.66 a 21
.............................................................CAGTGCATCACAGAACTT................... read_332297_2_0_0_0_0_0 MATURE 2 0.34 2 0.47 0 0.00 18
.............................................................aAGTGCATCACAGAACTTTGT................ read_133319_0_1_1_0_0_0 MATURE 2 0.34 2 0.47 0 0.00 20
.............................................................CAGTGCATCACAGAACTTTGTt............... read_213323_0_0_2_0_0_0 MATURE 2 0.34 2 0.47 0 0.00 t 21
.............................................................CAGTGCATCACAGtACTTTGT................ read_336897_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 13T7
.............................................................CAGTGCATCACAtAACTTTG................. read_29532_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 12T7
.............................................................CAGTGCATCACAGAACcTTG................. read_185969_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 16C3
.............................................................CAtTGCATCACAGAACTTTGTa............... read_278462_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 a 2T18
.............................................................CAGgGCATCACAGAACTTTGT................ read_68847_0_0_1_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 3G17
.............................................................CAGTGCATCACAGAACTgTG................. read_20670_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 17G2
.............................................................CAGTGCATCACAGtACTTTG................. read_282348_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 13T6
.............................................................CAGTGCATCACtGAACTTTGT................ read_242091_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 11T9
.............................................................CAGTGCATCACAGAACTTTtt................ read_372800_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 tt 19
.............................................................CAGTGCATCACAGAACTTTat................ read_327824_0_0_1_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 at 19
.............................................................CAaTGCATCACAGAACTTTGT................ read_373886_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 2A18
.............................................................CAGTGCATCACAGAACaTTGT................ read_22994_0_0_0_0_0_1 MATURE 1 0.17 0 0.00 1 0.66 16A4
.............................................................CAGTGCATCACAGAcCTTTGT................ read_195842_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 14C6
.............................................................CAGTGCATCACAGAtCTTTGTgt.............. read_297035_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 gt 14T6
.............................................................CAGTGCATCACAGAACTTTGTaa.............. read_85883_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 aa 21
.............................................................CAGTGgATCACAGAACTTTGT................ read_326960_0_0_1_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 5G15
.............................................................CAGTGCATCcCAGAACTTTGT................ read_397675_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.66 9C11
.............................................................CAGTGCAcCACAGAACTTTGT................ read_243358_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 7C13
.............................................................CAGTGCATCACAGAACTTTGTCa.............. read_189148_0_0_0_1_0_0 MATURE 1 0.17 0 0.00 1 0.66 a 22
.............................................................CAGTGCATCACAGAACTTTGTtt.............. read_152077_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.66 tt 21
.............................................................gAGTGCATCACAGAACTTTGT................ read_54347_0_1_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 20
.............................................................CAGTGCAcCACAGAACTTTG................. read_164763_1_0_0_0_0_0 MATURE 1 0.17 1 0.23 0 0.00 7C12
---------- ---------- ----------
580 429 151
(73.97) (26.03)
*** OTHER ***
_________________________________________________________________________________________________
CAGGCACCCTTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTA REF 15 103115556 - 103115652
TCAGTGCATCACAGAACTTTGT MATURE 15 103115617 - 103115734 mmu-miR-148b +
_________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................AAGTTCTGTTATACACTCAGGCT................................................... read_50204_1_3_2_1_1_0 OTHER 8 47.06 6 66.67 2 25.00 23
........................AAGTTCTGTTATACACTCAG...................................................... read_101251_1_0_0_0_1_1 OTHER 3 17.65 1 11.11 2 25.00 20
........................AAGTTCTGTTATACACTCAGG..................................................... read_3346_0_0_1_2_0_0 OTHER 3 17.65 1 11.11 2 25.00 21
........................AAGTTCTGTTATACACTCAGGC.................................................... read_46706_0_0_0_0_1_0 OTHER 1 5.88 0 0.00 1 12.50 22
........................AAGTTCTGTTATACACT......................................................... read_219612_0_0_0_0_0_1 OTHER 1 5.88 0 0.00 1 12.50 17
.......................GAAGTTCTGTTATACACTCA....................................................... read_288665_1_0_0_0_0_0 OTHER 1 5.88 1 11.11 0 0.00 20
---------- ---------- ----------
17 9 8
(52.94) (47.06)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 429 151 580 97.15%
OTHER 9 8 17 2.85%
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438 159 597
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