[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************
ID : mmu-mir-146b
DESCRIPTION : mmu-mir-146b MI0004665 Mus musculus miR-146b stem-loop
CHROMOSOME : 19
SPAN : 46417252 - 46417360
LENGTH : 109
SEQUENCE : GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-146b
ACCID : MI0004665
PARENT : mmu-mir-146b
CHROMOSOME : 19
START : 46417252
STOP : 46417360
OFFSET : 29..50
SEQUENCE : TGAGAACTGAATTCCATAGGCT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-146b*
ACCID : MI0004665
PARENT : mmu-mir-146b
CHROMOSOME : 19
START : 46417252
STOP : 46417360
OFFSET : 67..88
SEQUENCE : GCCCTAGGGACTCAGTTCTGGT
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF 19 46417252 - 46417360
TGAGAACTGAATTCCATAGGCT MATURE 19 46417281 - 46417410 mmu-miR-146b +
GCCCTAGGGACTCAGTTCTGGT MATURESTAR 19 46417319 - 46417448 mmu-miR-146b* +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................GAGAACTGAATTCCATAGGCT............................................................ read_223390_12_17_24_5_6_5 MATURE 69 27.71 53 27.04 16 30.19 21
.............................GAGAACTGAATTCCATAGGCTGT.......................................................... read_282550_17_14_14_4_6_2 MATURE 57 22.89 45 22.96 12 22.64 23
.............................GAGAACTGAATTCCATAGGCTG........................................................... read_141616_7_6_5_0_0_2 MATURE 20 8.03 18 9.18 2 3.77 22
.............................GAGAACTGAATTCCATgGGCTt........................................................... read_246212_6_5_2_0_1_4 MATURE 18 7.23 13 6.63 5 9.43 t 16G4
.............................GAGAACTGAATTCCATgGGCT............................................................ read_76707_3_6_2_2_0_3 MATURE 16 6.43 11 5.61 5 9.43 16G4
.............................GAGAACTGAATTCCATAGGC............................................................. read_345550_3_4_2_0_1_2 MATURE 12 4.82 9 4.59 3 5.66 20
.............................GAGAACTGAATTCCATAGGCTt........................................................... read_188365_3_3_0_0_0_1 MATURE 7 2.81 6 3.06 1 1.89 t 21
.............................GAGAACTGAATTCCATAGGtt............................................................ read_380744_2_2_2_0_0_0 MATURE 6 2.41 6 3.06 0 0.00 tt 19
.............................GAGAACTGAATTCCATAGGa............................................................. read_231553_2_2_0_0_0_0 MATURE 4 1.61 4 2.04 0 0.00 a 19
.............................GAGAACTGAATTCCATAGGttt........................................................... read_286009_0_1_2_1_0_0 MATURE 4 1.61 3 1.53 1 1.89 ttt 19
.............................GAGAACTGAATTCCATAGGtttt.......................................................... read_236230_0_2_0_0_0_1 MATURE 3 1.20 2 1.02 1 1.89 tttt 19
.............................GAGAACTGAATTCCATAGGaa............................................................ read_255316_1_2_0_0_0_0 MATURE 3 1.20 3 1.53 0 0.00 aa 19
.............................GAGAACTGAATTCCATAGGCa............................................................ read_384048_0_0_2_0_0_0 MATURE 2 0.80 2 1.02 0 0.00 a 20
.............................GAGAACTGAATTCCATAGGCat........................................................... read_297803_0_0_2_0_0_0 MATURE 2 0.80 2 1.02 0 0.00 at 20
.............................GAGAACTGAATTCCATgGGCTtt.......................................................... read_336445_1_0_0_1_0_0 MATURE 2 0.80 1 0.51 1 1.89 tt 16G4
.............................GAGAACTGAATTCCATAGGCTGa.......................................................... read_54766_2_0_0_0_0_0 MATURE 2 0.80 2 1.02 0 0.00 a 22
.............................GAGAACTGAATTCCATAGGCTtt.......................................................... read_130663_0_0_1_0_1_0 MATURE 2 0.80 1 0.51 1 1.89 tt 21
.............................GAGAACTGAATTCCATAGGat............................................................ read_36073_0_1_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 at 19
.............................GAGAACTGAATTCCATAGGCTGgt......................................................... read_228441_0_0_0_1_0_0 MATURE 1 0.40 0 0.00 1 1.89 gt 22
.............................GAGAACTGAATTCCcTAGGCTGT.......................................................... read_325041_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 1.89 14C8
.............................GAGAACTGtATTCCATAGGCT............................................................ read_169775_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 8T12
.............................GAGAACTGAATTCCATAG............................................................... read_221383_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 1.89 18
.............................GAGAACcGAATTCCATAGGCTt........................................................... read_103422_1_0_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 t 6C14
.............................GAGAACTGAATTCCATAGGaaa........................................................... read_312086_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 aaa 19
.............................GAGAACTGAATTCCATgGGCTG........................................................... read_392246_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 16G5
..............................AGAACTGAATTCCATAGGCTGT.......................................................... read_165515_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 1.89 22
.............................GAGAACTGAATTCCATAGttt............................................................ read_330035_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 1.89 ttt 18
.............................GAGAACTGAATTCCATAGGag............................................................ read_47005_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 ag 19
.............................GAGAgCTGAATTCCATAGGCT............................................................ read_2039_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 4G16
.............................GAGAACTGAATTCCATgGGCTttt......................................................... read_325249_0_1_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 ttt 16G4
.............................GAGAACTGAgTTCCATAGGCTGT.......................................................... read_56843_0_1_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 9G13
.............................GAGAACTGAATTCCATAGGCaa........................................................... read_155419_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 aa 20
.............................GAGgACTGAATTCCATAGGCTGa.......................................................... read_325922_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 a 3G18
.............................GAGAACcGAATTCCATAGGCT............................................................ read_161095_1_0_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 6C14
.............................GAGAACTGAATTCCATAGGCTat.......................................................... read_190555_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 at 21
.............................GAGAACTGAATTCCATAGGt............................................................. read_361707_1_0_0_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 t 19
.............................GAGAACTGAATTCCATAGta............................................................. read_154107_0_0_1_0_0_0 MATURE 1 0.40 1 0.51 0 0.00 ta 18
---------- ---------- ----------
249 196 53
(78.71) (21.29)
*** MATURESTAR ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF 19 46417252 - 46417360
TGAGAACTGAATTCCATAGGCT MATURE 19 46417281 - 46417410 mmu-miR-146b +
GCCCTAGGGACTCAGTTCTGGT MATURESTAR 19 46417319 - 46417448 mmu-miR-146b* +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................................CCCTAGGGACTCAGTTCTGGT...................... read_187312_1_1_0_0_0_1 MATURESTAR 3 60.00 2 66.67 1 50.00 21
...................................................................CCCTAGGGACTCAGTTCTG........................ read_224789_0_1_0_0_0_0 MATURESTAR 1 20.00 1 33.33 0 0.00 19
...................................................................CCCTgGGGACTCAGTTCTGGT...................... read_272338_0_0_0_1_0_0 MATURESTAR 1 20.00 0 0.00 1 50.00 4G16
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5 3 2
(60.00) (40.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 196 53 249 98.03%
MATURESTAR 3 2 5 1.97%
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199 55 254
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