[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-143
DESCRIPTION : mmu-mir-143 MI0000257 Mus musculus miR-143 stem-loop
CHROMOSOME : 18
SPAN : 61808850 - 61808912
LENGTH : 63
SEQUENCE : CCTGAGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGG
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-143
ACCID : MI0000257
PARENT : mmu-mir-143
CHROMOSOME : 18
START : 61808850
STOP : 61808912
OFFSET : 40..60
SEQUENCE : TGAGATGAAGCACTGTAGCTC
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________
CCTGAGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGG REF 18 61808850 - 61808912
TGAGATGAAGCACTGTAGCTC MATURE 18 61808890 - 61808972 mmu-miR-143 -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................GAGATGAAGCACTGTAGCTCt... read_18103_13_16_20_0_4_3 MATURE 56 44.80 49 44.95 7 43.75 t 20
........................................GAGATGAAGCACTGTAGCTC.... read_164267_6_9_6_1_2_0 MATURE 24 19.20 21 19.27 3 18.75 20
........................................GAGATGAAGCACTGTAGCT..... read_324628_7_6_5_0_0_2 MATURE 20 16.00 18 16.51 2 12.50 19
........................................GAGATGAAGCACTGTAGCTCA... read_31212_4_1_1_0_1_2 MATURE 9 7.20 6 5.50 3 18.75 21
........................................GAGATGAAGCACTGTAGCTCtt.. read_272476_3_0_2_0_0_0 MATURE 5 4.00 5 4.59 0 0.00 tt 20
........................................GAGATGAAGCACTGcAGCTC.... read_15179_2_0_0_0_0_0 MATURE 2 1.60 2 1.83 0 0.00 14C5
........................................GAGATGAAGCACTGTAGCTa.... read_76562_0_0_1_0_0_1 MATURE 2 1.60 1 0.92 1 6.25 a 19
........................................GAGATGAAGCACTGTAG....... read_165291_2_0_0_0_0_0 MATURE 2 1.60 2 1.83 0 0.00 17
........................................GAGATGAAGCACTGTAGCTaa... read_73694_0_1_0_0_0_0 MATURE 1 0.80 1 0.92 0 0.00 aa 19
........................................GAGATGAAGCACTGTAGCTtt... read_140971_0_1_0_0_0_0 MATURE 1 0.80 1 0.92 0 0.00 tt 19
........................................GAGATGAAGCACTGTAGCTaat.. read_281262_0_0_1_0_0_0 MATURE 1 0.80 1 0.92 0 0.00 aat 19
........................................GAGATGAAGCACTGTAGCTt.... read_53509_0_1_0_0_0_0 MATURE 1 0.80 1 0.92 0 0.00 t 19
........................................GAGATGAAGCACTGTAGC...... read_408347_0_1_0_0_0_0 MATURE 1 0.80 1 0.92 0 0.00 18
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125 109 16
(87.20) (12.80)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 109 16 125 100.00%
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109 16 125
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