[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-141
DESCRIPTION        : mmu-mir-141 MI0000166 Mus musculus miR-141 stem-loop
CHROMOSOME         : 6
SPAN               : 124667932 - 124668003
LENGTH             : 72
SEQUENCE           : GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC
OVERHANG THRESHOLD : 75%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-141
ACCID      : MI0000166
PARENT     : mmu-mir-141
CHROMOSOME : 6
START      : 124667932
STOP       : 124668003
OFFSET     : 48..69
SEQUENCE   : TAACACTGTCTGGTAAAGATGG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-141*
ACCID      : MI0000166
PARENT     : mmu-mir-141
CHROMOSOME : 6
START      : 124667932
STOP       : 124668003
OFFSET     : 6..27
SEQUENCE   : CATCTTCCAGTGCAGTGTTGGA
STRAND     : -
******************************



*** MATURE ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF                  6                    124667932 - 124668003 
                                               TAACACTGTCTGGTAAAGATGG    MATURE               6                    124667980 - 124668072 mmu-miR-141          -                    
     CATCTTCCAGTGCAGTGTTGGA                                              MATURESTAR           6                    124667938 - 124668030 mmu-miR-141*         -                    
________________________________________________________________________

                                                                    -SEQ-                     -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................AACACTGTCTGGTAAAGATGG....   read_134411_10_9_8_2_5_7       MATURE           41        39.05           27        36.49           14        45.16                        21   
................................................AACACTGTCTGGTAAAGATG.....    read_300877_4_6_7_2_2_1       MATURE           22        20.95           17        22.97            5        16.13                        20   
................................................AACACTGTCTGGTAAAGATGGC...    read_399156_2_4_1_0_1_2       MATURE           10         9.52            7         9.46            3         9.68                        22   
................................................AACACTGTCTGGTAAAGAT......    read_406519_2_2_0_1_1_0       MATURE            6         5.71            4         5.41            2         6.45                        19   
................................................AACACTGTCTGGTAAAGATGGa...    read_335996_1_2_1_0_0_1       MATURE            5         4.76            4         5.41            1         3.23            a           21   
................................................AACACTGTCTGGTAAAGATGGt...    read_314611_1_0_1_2_0_1       MATURE            5         4.76            2         2.70            3         9.68            t           21   
................................................AACACTGTCTGGTAAAGATGt....    read_318681_2_0_1_0_0_0       MATURE            3         2.86            3         4.05            0         0.00            t           20   
................................................AACACTGTCTGGTAAAGATGtt...    read_181045_0_0_1_0_1_0       MATURE            2         1.90            1         1.35            1         3.23           tt           20   
................................................AACACTGTCTGGTAAAGATtgt...    read_347290_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00          tgt           19   
................................................AACACTGTCTGGTAAAGAcGG....    read_285134_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                      18C2   
................................................AACACTGTCTGGaAAAGATGG....    read_105852_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                      12A8   
................................................AACACTGTCTGGTAAAGATGtta..     read_85776_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         3.23          tta           20   
................................................AACACTGTCTGGTAAAGAaGGC...    read_259496_1_0_0_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                      18A3   
................................................AACACTGTCTGGTAAAGATag....    read_285509_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00           ag           19   
................................................AACACTGTCTGGTAAAGATa.....    read_379896_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00            a           19   
................................................AACACTGTCTGGTAcAGATGGC...    read_238724_0_1_0_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                      14C7   
................................................AACACTGTCTGGTAAAtATGGC...    read_401061_0_0_1_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                      16T5   
................................................AACACTGTCTcGTAAAGATG.....    read_286121_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         3.23                      10C9   
...............................................TAACACTGTCTGGTAAAGATG.....    read_184548_1_0_0_0_0_0       MATURE            1         0.95            1         1.35            0         0.00                        21   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                           105                        74                        31                                          
                                                                                                                                                 (70.48)                   (29.52)                                       




*** MATURESTAR ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF                  6                    124667932 - 124668003 
                                               TAACACTGTCTGGTAAAGATGG    MATURE               6                    124667980 - 124668072 mmu-miR-141          -                    
     CATCTTCCAGTGCAGTGTTGGA                                              MATURESTAR           6                    124667938 - 124668030 mmu-miR-141*         -                    
________________________________________________________________________

                                                                    -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....CCATCTTCCAGTGCAGTGTTGGA..............................................   read_293543_0_1_0_0_0_0   MATURESTAR            1        50.00            1        50.00            0            0                        23   
......ATCTTCCAGTGCAGTGTTGtg..............................................   read_346525_1_0_0_0_0_0   MATURESTAR            1        50.00            1        50.00            0            0           tg           19   
                                                                                                                   ----------                ----------                ----------   
                                                                                                                            2                         2                         0                                          
                                                                                                                                               (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              74              31             105          98.13%
     MATURESTAR               2               0               2           1.87%
                     ----------      ----------      ----------                
                             76              31             107                



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