[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************
ID : mmu-mir-141
DESCRIPTION : mmu-mir-141 MI0000166 Mus musculus miR-141 stem-loop
CHROMOSOME : 6
SPAN : 124667932 - 124668003
LENGTH : 72
SEQUENCE : GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC
OVERHANG THRESHOLD : 75%
*********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-141
ACCID : MI0000166
PARENT : mmu-mir-141
CHROMOSOME : 6
START : 124667932
STOP : 124668003
OFFSET : 48..69
SEQUENCE : TAACACTGTCTGGTAAAGATGG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-141*
ACCID : MI0000166
PARENT : mmu-mir-141
CHROMOSOME : 6
START : 124667932
STOP : 124668003
OFFSET : 6..27
SEQUENCE : CATCTTCCAGTGCAGTGTTGGA
STRAND : -
******************************
*** MATURE ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF 6 124667932 - 124668003
TAACACTGTCTGGTAAAGATGG MATURE 6 124667980 - 124668072 mmu-miR-141 -
CATCTTCCAGTGCAGTGTTGGA MATURESTAR 6 124667938 - 124668030 mmu-miR-141* -
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................AACACTGTCTGGTAAAGATGG.... read_134411_10_9_8_2_5_7 MATURE 41 39.05 27 36.49 14 45.16 21
................................................AACACTGTCTGGTAAAGATG..... read_300877_4_6_7_2_2_1 MATURE 22 20.95 17 22.97 5 16.13 20
................................................AACACTGTCTGGTAAAGATGGC... read_399156_2_4_1_0_1_2 MATURE 10 9.52 7 9.46 3 9.68 22
................................................AACACTGTCTGGTAAAGAT...... read_406519_2_2_0_1_1_0 MATURE 6 5.71 4 5.41 2 6.45 19
................................................AACACTGTCTGGTAAAGATGGa... read_335996_1_2_1_0_0_1 MATURE 5 4.76 4 5.41 1 3.23 a 21
................................................AACACTGTCTGGTAAAGATGGt... read_314611_1_0_1_2_0_1 MATURE 5 4.76 2 2.70 3 9.68 t 21
................................................AACACTGTCTGGTAAAGATGt.... read_318681_2_0_1_0_0_0 MATURE 3 2.86 3 4.05 0 0.00 t 20
................................................AACACTGTCTGGTAAAGATGtt... read_181045_0_0_1_0_1_0 MATURE 2 1.90 1 1.35 1 3.23 tt 20
................................................AACACTGTCTGGTAAAGATtgt... read_347290_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 tgt 19
................................................AACACTGTCTGGTAAAGAcGG.... read_285134_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 18C2
................................................AACACTGTCTGGaAAAGATGG.... read_105852_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 12A8
................................................AACACTGTCTGGTAAAGATGtta.. read_85776_0_0_0_1_0_0 MATURE 1 0.95 0 0.00 1 3.23 tta 20
................................................AACACTGTCTGGTAAAGAaGGC... read_259496_1_0_0_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 18A3
................................................AACACTGTCTGGTAAAGATag.... read_285509_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 ag 19
................................................AACACTGTCTGGTAAAGATa..... read_379896_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 a 19
................................................AACACTGTCTGGTAcAGATGGC... read_238724_0_1_0_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 14C7
................................................AACACTGTCTGGTAAAtATGGC... read_401061_0_0_1_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 16T5
................................................AACACTGTCTcGTAAAGATG..... read_286121_0_0_0_1_0_0 MATURE 1 0.95 0 0.00 1 3.23 10C9
...............................................TAACACTGTCTGGTAAAGATG..... read_184548_1_0_0_0_0_0 MATURE 1 0.95 1 1.35 0 0.00 21
---------- ---------- ----------
105 74 31
(70.48) (29.52)
*** MATURESTAR ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF 6 124667932 - 124668003
TAACACTGTCTGGTAAAGATGG MATURE 6 124667980 - 124668072 mmu-miR-141 -
CATCTTCCAGTGCAGTGTTGGA MATURESTAR 6 124667938 - 124668030 mmu-miR-141* -
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....CCATCTTCCAGTGCAGTGTTGGA.............................................. read_293543_0_1_0_0_0_0 MATURESTAR 1 50.00 1 50.00 0 0 23
......ATCTTCCAGTGCAGTGTTGtg.............................................. read_346525_1_0_0_0_0_0 MATURESTAR 1 50.00 1 50.00 0 0 tg 19
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 74 31 105 98.13%
MATURESTAR 2 0 2 1.87%
---------- ---------- ----------
76 31 107
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