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REFERENCE HAIRPIN
************************************************************************************************************************
ID                 : mmu-mir-138-1
DESCRIPTION        : mmu-mir-138-1 MI0000722 Mus musculus miR-138-1 stem-loop
CHROMOSOME         : 9
SPAN               : 122591994 - 122592092
LENGTH             : 99
SEQUENCE           : CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG
OVERHANG THRESHOLD : 75%
************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-138
ACCID      : MI0000722
PARENT     : mmu-mir-138-1
CHROMOSOME : 9
START      : 122591994
STOP       : 122592092
OFFSET     : 23..45
SEQUENCE   : AGCTGGTGTTGTGAATCAGGCCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-138*
ACCID      : MI0000722
PARENT     : mmu-mir-138-1
CHROMOSOME : 9
START      : 122591994
STOP       : 122592092
OFFSET     : 61..82
SEQUENCE   : CGGCTACTTCACAACACCAGGG
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________________________________________
CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG REF                  9                    122591994 - 122592092 
                      AGCTGGTGTTGTGAATCAGGCCG                                                       MATURE               9                    122592017 - 122592137 mmu-miR-138          +                    
                                                            CGGCTACTTCACAACACCAGGG                  MATURESTAR           9                    122592055 - 122592174 mmu-miR-138*         +                    
___________________________________________________________________________________________________

                                                                                               -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................GCTGGTGTTGTGAATCAGGCCG.......................................................   read_322248_0_1_4_1_1_2       MATURE            9        36.00            5        41.67            4        30.77                        22   
.......................GCTGGTGTTGTGAATCAGGCCGT......................................................    read_16416_0_3_1_0_2_1       MATURE            7        28.00            4        33.33            3        23.08                        23   
.......................GCTGGTGTTGTGAATCAGGCCGTT.....................................................   read_267058_0_0_1_0_0_0       MATURE            1         4.00            1         8.33            0         0.00                        24   
.......................GCTGGTGTTGaGAATCAGGCCG.......................................................   read_128371_1_0_0_0_0_0       MATURE            1         4.00            1         8.33            0         0.00                     10A11   
.......................GCTGGTGTTGTGAATCAGGCCaTT.....................................................   read_223704_0_0_0_0_0_1       MATURE            1         4.00            0         0.00            1         7.69                      21A2   
.......................GCTGGcGTTGTGAATCAGGCCG.......................................................   read_270444_0_0_0_0_1_0       MATURE            1         4.00            0         0.00            1         7.69                      5C16   
.......................GCTGGTGTTGTGAATCAGG..........................................................   read_341575_0_0_0_0_1_0       MATURE            1         4.00            0         0.00            1         7.69                        19   
.......................GCTGGTGTTGTGAATCAGGC.........................................................   read_200018_0_0_0_1_0_0       MATURE            1         4.00            0         0.00            1         7.69                        20   
.......................GCTGGTGTTGTGAATCAGGaCGT......................................................   read_200163_0_1_0_0_0_0       MATURE            1         4.00            1         8.33            0         0.00                      19A3   
.......................GCTGGTGTTGTGAATCAcGCCGTT.....................................................   read_128387_0_0_0_0_0_1       MATURE            1         4.00            0         0.00            1         7.69                      17C6   
.......................GCTGGTGTTGTGAATCAGGCat.......................................................   read_171994_0_0_0_1_0_0       MATURE            1         4.00            0         0.00            1         7.69           at           20   
                                                                                                                                              ----------                ----------                ----------   
                                                                                                                                                      25                        12                        13                                          
                                                                                                                                                                           (48.00)                   (52.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              12              13              25         100.00%
                     ----------      ----------      ----------                
                             12              13              25                



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