[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-138-1
DESCRIPTION : mmu-mir-138-1 MI0000722 Mus musculus miR-138-1 stem-loop
CHROMOSOME : 9
SPAN : 122591994 - 122592092
LENGTH : 99
SEQUENCE : CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-138
ACCID : MI0000722
PARENT : mmu-mir-138-1
CHROMOSOME : 9
START : 122591994
STOP : 122592092
OFFSET : 23..45
SEQUENCE : AGCTGGTGTTGTGAATCAGGCCG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-138*
ACCID : MI0000722
PARENT : mmu-mir-138-1
CHROMOSOME : 9
START : 122591994
STOP : 122592092
OFFSET : 61..82
SEQUENCE : CGGCTACTTCACAACACCAGGG
STRAND : +
******************************
*** MATURE ***
___________________________________________________________________________________________________
CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG REF 9 122591994 - 122592092
AGCTGGTGTTGTGAATCAGGCCG MATURE 9 122592017 - 122592137 mmu-miR-138 +
CGGCTACTTCACAACACCAGGG MATURESTAR 9 122592055 - 122592174 mmu-miR-138* +
___________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................GCTGGTGTTGTGAATCAGGCCG....................................................... read_322248_0_1_4_1_1_2 MATURE 9 36.00 5 41.67 4 30.77 22
.......................GCTGGTGTTGTGAATCAGGCCGT...................................................... read_16416_0_3_1_0_2_1 MATURE 7 28.00 4 33.33 3 23.08 23
.......................GCTGGTGTTGTGAATCAGGCCGTT..................................................... read_267058_0_0_1_0_0_0 MATURE 1 4.00 1 8.33 0 0.00 24
.......................GCTGGTGTTGaGAATCAGGCCG....................................................... read_128371_1_0_0_0_0_0 MATURE 1 4.00 1 8.33 0 0.00 10A11
.......................GCTGGTGTTGTGAATCAGGCCaTT..................................................... read_223704_0_0_0_0_0_1 MATURE 1 4.00 0 0.00 1 7.69 21A2
.......................GCTGGcGTTGTGAATCAGGCCG....................................................... read_270444_0_0_0_0_1_0 MATURE 1 4.00 0 0.00 1 7.69 5C16
.......................GCTGGTGTTGTGAATCAGG.......................................................... read_341575_0_0_0_0_1_0 MATURE 1 4.00 0 0.00 1 7.69 19
.......................GCTGGTGTTGTGAATCAGGC......................................................... read_200018_0_0_0_1_0_0 MATURE 1 4.00 0 0.00 1 7.69 20
.......................GCTGGTGTTGTGAATCAGGaCGT...................................................... read_200163_0_1_0_0_0_0 MATURE 1 4.00 1 8.33 0 0.00 19A3
.......................GCTGGTGTTGTGAATCAcGCCGTT..................................................... read_128387_0_0_0_0_0_1 MATURE 1 4.00 0 0.00 1 7.69 17C6
.......................GCTGGTGTTGTGAATCAGGCat....................................................... read_171994_0_0_0_1_0_0 MATURE 1 4.00 0 0.00 1 7.69 at 20
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25 12 13
(48.00) (52.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 12 13 25 100.00%
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12 13 25
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