[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************************************************
ID                 : mmu-mir-135a-2
DESCRIPTION        : mmu-mir-135a-2 MI0000715 Mus musculus miR-135a-2 stem-loop
CHROMOSOME         : 10
SPAN               : 91534831 - 91534930
LENGTH             : 100
SEQUENCE           : AGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATCGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAATTCA
OVERHANG THRESHOLD : 75%
*************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-135a
ACCID      : MI0000715
PARENT     : mmu-mir-135a-2
CHROMOSOME : 10
START      : 91534831
STOP       : 91534930
OFFSET     : 23..45
SEQUENCE   : TATGGCTTTTTATTCCTATGTGA
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________________________________________
AGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATCGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAATTCA REF                  10                   91534831 - 91534930  
                      TATGGCTTTTTATTCCTATGTGA                                                        MATURE               10                   91534854 - 91534975  mmu-miR-135a         -                    
____________________________________________________________________________________________________

                                                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................ATGGCTTTTTATTCCTATGTGA........................................................   read_254700_0_1_0_0_0_0       MATURE            1        33.33            1        33.33            0            0                        22   
.......................ATGGCTTTTTATTCCTATGTta........................................................   read_256260_0_1_0_0_0_0       MATURE            1        33.33            1        33.33            0            0           ta           20   
.......................ATGGCTTTTTATTCgTATGTGt........................................................   read_381402_1_0_0_0_0_0       MATURE            1        33.33            1        33.33            0            0            t         14G6   
                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                        3                         3                         0                                          
                                                                                                                                                                           (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               3               0               3         100.00%
                     ----------      ----------      ----------                
                              3               0               3                



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