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REFERENCE HAIRPIN
***************************************************************************************************************
ID                 : mmu-mir-135a-1
DESCRIPTION        : mmu-mir-135a-1 MI0000161 Mus musculus miR-135a-1 stem-loop
CHROMOSOME         : 9
SPAN               : 106056455 - 106056544
LENGTH             : 90
SEQUENCE           : AGGCCTCACTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTATTGCTCGCTCATATAGGGATTGGAGCCGTGGCGTACGGTGAGGATA
OVERHANG THRESHOLD : 75%
***************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-135a
ACCID      : MI0000161
PARENT     : mmu-mir-135a-1
CHROMOSOME : 9
START      : 106056455
STOP       : 106056544
OFFSET     : 17..39
SEQUENCE   : TATGGCTTTTTATTCCTATGTGA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-135a*
ACCID      : MI0000161
PARENT     : mmu-mir-135a-1
CHROMOSOME : 9
START      : 106056455
STOP       : 106056544
OFFSET     : 56..77
SEQUENCE   : TATAGGGATTGGAGCCGTGGCG
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________________
AGGCCTCACTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTATTGCTCGCTCATATAGGGATTGGAGCCGTGGCGTACGGTGAGGATA REF                  9                    106056455 - 106056544 
                TATGGCTTTTTATTCCTATGTGA                                                    MATURE               9                    106056472 - 106056583 mmu-miR-135a         +                    
                                                       TATAGGGATTGGAGCCGTGGCG              MATURESTAR           9                    106056511 - 106056621 mmu-miR-135a*        +                    
__________________________________________________________________________________________

                                                                                      -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................ATGGCTTTTTATTCCTATGTGA....................................................   read_254700_0_1_0_0_0_0       MATURE            1        33.33            1        33.33            0            0                        22   
.................ATGGCTTTTTATTCCTATGTta....................................................   read_256260_0_1_0_0_0_0       MATURE            1        33.33            1        33.33            0            0           ta           20   
.................ATGGCTTTTTATTCgTATGTGt....................................................   read_381402_1_0_0_0_0_0       MATURE            1        33.33            1        33.33            0            0            t         14G6   
                                                                                                                                     ----------                ----------                ----------   
                                                                                                                                              3                         3                         0                                          
                                                                                                                                                                 (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               3               0               3         100.00%
                     ----------      ----------      ----------                
                              3               0               3                



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