[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-135a-1
DESCRIPTION : mmu-mir-135a-1 MI0000161 Mus musculus miR-135a-1 stem-loop
CHROMOSOME : 9
SPAN : 106056455 - 106056544
LENGTH : 90
SEQUENCE : AGGCCTCACTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTATTGCTCGCTCATATAGGGATTGGAGCCGTGGCGTACGGTGAGGATA
OVERHANG THRESHOLD : 75%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-135a
ACCID : MI0000161
PARENT : mmu-mir-135a-1
CHROMOSOME : 9
START : 106056455
STOP : 106056544
OFFSET : 17..39
SEQUENCE : TATGGCTTTTTATTCCTATGTGA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-135a*
ACCID : MI0000161
PARENT : mmu-mir-135a-1
CHROMOSOME : 9
START : 106056455
STOP : 106056544
OFFSET : 56..77
SEQUENCE : TATAGGGATTGGAGCCGTGGCG
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________
AGGCCTCACTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTATTGCTCGCTCATATAGGGATTGGAGCCGTGGCGTACGGTGAGGATA REF 9 106056455 - 106056544
TATGGCTTTTTATTCCTATGTGA MATURE 9 106056472 - 106056583 mmu-miR-135a +
TATAGGGATTGGAGCCGTGGCG MATURESTAR 9 106056511 - 106056621 mmu-miR-135a* +
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................ATGGCTTTTTATTCCTATGTGA.................................................... read_254700_0_1_0_0_0_0 MATURE 1 33.33 1 33.33 0 0 22
.................ATGGCTTTTTATTCCTATGTta.................................................... read_256260_0_1_0_0_0_0 MATURE 1 33.33 1 33.33 0 0 ta 20
.................ATGGCTTTTTATTCgTATGTGt.................................................... read_381402_1_0_0_0_0_0 MATURE 1 33.33 1 33.33 0 0 t 14G6
---------- ---------- ----------
3 3 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 3 0 3 100.00%
---------- ---------- ----------
3 0 3
[END]