[BEGIN]

REFERENCE HAIRPIN
*****************************************************************************************************************************
ID                 : mmu-mir-133a-2
DESCRIPTION        : mmu-mir-133a-2 MI0000820 Mus musculus miR-133a-2 stem-loop
CHROMOSOME         : 2
SPAN               : 180133084 - 180133187
LENGTH             : 104
SEQUENCE           : AGAAGCCAAATGCTTTGCTGAAGCTGGTAAAATGGAACCAAATCAGCTGTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGCGCATTGATCACGCCGCA
OVERHANG THRESHOLD : 75%
*****************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-133a
ACCID      : MI0000820
PARENT     : mmu-mir-133a-2
CHROMOSOME : 2
START      : 180133084
STOP       : 180133187
OFFSET     : 59..80
SEQUENCE   : TTTGGTCCCCTTCAACCAGCTG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-133a*
ACCID      : MI0000820
PARENT     : mmu-mir-133a-2
CHROMOSOME : 2
START      : 180133084
STOP       : 180133187
OFFSET     : 23..43
SEQUENCE   : GCTGGTAAAATGGAACCAAAT
STRAND     : +
******************************



*** MATURE ***
________________________________________________________________________________________________________
AGAAGCCAAATGCTTTGCTGAAGCTGGTAAAATGGAACCAAATCAGCTGTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGCGCATTGATCACGCCGCA REF                  2                    180133084 - 180133187 
                                                          TTTGGTCCCCTTCAACCAGCTG                         MATURE               2                    180133143 - 180133267 mmu-miR-133a         +                    
                      GCTGGTAAAATGGAACCAAAT                                                              MATURESTAR           2                    180133107 - 180133230 mmu-miR-133a*        +                    
________________________________________________________________________________________________________

                                                                                                    -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................TGGTCCCCTTCAACCAGCTGT........................       read_1962_5_11_7_2_3_6       MATURE           34        56.67           23        57.50           11        55.00                        21   
...........................................................TTGGTCCCCTTCAACCAGCTGT........................      read_403664_3_1_1_0_3_1       MATURE            9        15.00            5        12.50            4        20.00                        22   
...........................................................TTGGTCCCCTTCAACCAGCTG.........................      read_278953_1_0_0_1_2_1       MATURE            5         8.33            1         2.50            4        20.00                        21   
.............................................................GGTCCCCTTCAACCAGCTGT........................        read_4787_2_2_0_0_0_0       MATURE            4         6.67            4        10.00            0         0.00                        20   
............................................................TGGTCCCCTTCAACCAGCT..........................      read_330574_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        19   
...........................................................TTGGTCCCCTTCAACCAGt...........................       read_66069_0_0_1_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            t           18   
............................................................TGGTCCCCTTCAACCAG............................      read_121282_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        17   
............................................................TGGTCCCCTTCAACCAGCTG.........................      read_324717_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        20   
............................................................TGGTCCCCTTCAACCAGCTGa........................      read_362204_0_0_0_0_0_1       MATURE            1         1.67            0         0.00            1         5.00            a           20   
............................................................TGGTCCCCTTCAACCAGCTGc........................      read_309899_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            c           20   
...........................................................TTGGTCCCCTTCAACCAGCTGc........................      read_193920_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            c           21   
............................................................TGGTCCCCTTCAACaAGCTGT........................       read_27048_1_0_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                      14A6   
                                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                                              60                        40                        20                                          
                                                                                                                                                                                   (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              40              20              60         100.00%
                     ----------      ----------      ----------                
                             40              20              60                



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