[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-133a-2
DESCRIPTION : mmu-mir-133a-2 MI0000820 Mus musculus miR-133a-2 stem-loop
CHROMOSOME : 2
SPAN : 180133084 - 180133187
LENGTH : 104
SEQUENCE : AGAAGCCAAATGCTTTGCTGAAGCTGGTAAAATGGAACCAAATCAGCTGTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGCGCATTGATCACGCCGCA
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-133a
ACCID : MI0000820
PARENT : mmu-mir-133a-2
CHROMOSOME : 2
START : 180133084
STOP : 180133187
OFFSET : 59..80
SEQUENCE : TTTGGTCCCCTTCAACCAGCTG
STRAND : +
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TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-133a*
ACCID : MI0000820
PARENT : mmu-mir-133a-2
CHROMOSOME : 2
START : 180133084
STOP : 180133187
OFFSET : 23..43
SEQUENCE : GCTGGTAAAATGGAACCAAAT
STRAND : +
******************************
*** MATURE ***
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AGAAGCCAAATGCTTTGCTGAAGCTGGTAAAATGGAACCAAATCAGCTGTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGCGCATTGATCACGCCGCA REF 2 180133084 - 180133187
TTTGGTCCCCTTCAACCAGCTG MATURE 2 180133143 - 180133267 mmu-miR-133a +
GCTGGTAAAATGGAACCAAAT MATURESTAR 2 180133107 - 180133230 mmu-miR-133a* +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................................TGGTCCCCTTCAACCAGCTGT........................ read_1962_5_11_7_2_3_6 MATURE 34 56.67 23 57.50 11 55.00 21
...........................................................TTGGTCCCCTTCAACCAGCTGT........................ read_403664_3_1_1_0_3_1 MATURE 9 15.00 5 12.50 4 20.00 22
...........................................................TTGGTCCCCTTCAACCAGCTG......................... read_278953_1_0_0_1_2_1 MATURE 5 8.33 1 2.50 4 20.00 21
.............................................................GGTCCCCTTCAACCAGCTGT........................ read_4787_2_2_0_0_0_0 MATURE 4 6.67 4 10.00 0 0.00 20
............................................................TGGTCCCCTTCAACCAGCT.......................... read_330574_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 19
...........................................................TTGGTCCCCTTCAACCAGt........................... read_66069_0_0_1_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 t 18
............................................................TGGTCCCCTTCAACCAG............................ read_121282_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 17
............................................................TGGTCCCCTTCAACCAGCTG......................... read_324717_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 20
............................................................TGGTCCCCTTCAACCAGCTGa........................ read_362204_0_0_0_0_0_1 MATURE 1 1.67 0 0.00 1 5.00 a 20
............................................................TGGTCCCCTTCAACCAGCTGc........................ read_309899_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 c 20
...........................................................TTGGTCCCCTTCAACCAGCTGc........................ read_193920_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 c 21
............................................................TGGTCCCCTTCAACaAGCTGT........................ read_27048_1_0_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 14A6
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60 40 20
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 40 20 60 100.00%
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40 20 60
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