[BEGIN]

REFERENCE HAIRPIN
*****************************************************************************************
ID                 : mmu-mir-133a-1
DESCRIPTION        : mmu-mir-133a-1 MI0000159 Mus musculus miR-133a-1 stem-loop
CHROMOSOME         : 18
SPAN               : 10782907 - 10782974
LENGTH             : 68
SEQUENCE           : GCTAAAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGC
OVERHANG THRESHOLD : 75%
*****************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-133a
ACCID      : MI0000159
PARENT     : mmu-mir-133a-1
CHROMOSOME : 18
START      : 10782907
STOP       : 10782974
OFFSET     : 43..64
SEQUENCE   : TTTGGTCCCCTTCAACCAGCTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-133a*
ACCID      : MI0000159
PARENT     : mmu-mir-133a-1
CHROMOSOME : 18
START      : 10782907
STOP       : 10782974
OFFSET     : 7..27
SEQUENCE   : GCTGGTAAAATGGAACCAAAT
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________
GCTAAAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGC REF                  18                   10782907 - 10782974  
                                          TTTGGTCCCCTTCAACCAGCTG     MATURE               18                   10782950 - 10783038  mmu-miR-133a         -                    
      GCTGGTAAAATGGAACCAAAT                                          MATURESTAR           18                   10782914 - 10783001  mmu-miR-133a*        -                    
____________________________________________________________________

                                                                -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................TGGTCCCCTTCAACCAGCTGT....       read_1962_5_11_7_2_3_6       MATURE           34        56.67           23        57.50           11        55.00                        21   
...........................................TTGGTCCCCTTCAACCAGCTGT....      read_403664_3_1_1_0_3_1       MATURE            9        15.00            5        12.50            4        20.00                        22   
...........................................TTGGTCCCCTTCAACCAGCTG.....      read_278953_1_0_0_1_2_1       MATURE            5         8.33            1         2.50            4        20.00                        21   
.............................................GGTCCCCTTCAACCAGCTGT....        read_4787_2_2_0_0_0_0       MATURE            4         6.67            4        10.00            0         0.00                        20   
............................................TGGTCCCCTTCAACCAGCT......      read_330574_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        19   
...........................................TTGGTCCCCTTCAACCAGt.......       read_66069_0_0_1_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            t           18   
............................................TGGTCCCCTTCAACCAG........      read_121282_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        17   
............................................TGGTCCCCTTCAACCAGCTG.....      read_324717_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                        20   
............................................TGGTCCCCTTCAACCAGCTGa....      read_362204_0_0_0_0_0_1       MATURE            1         1.67            0         0.00            1         5.00            a           20   
............................................TGGTCCCCTTCAACCAGCTGc....      read_309899_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            c           20   
...........................................TTGGTCCCCTTCAACCAGCTGc....      read_193920_0_1_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00            c           21   
............................................TGGTCCCCTTCAACaAGCTGT....       read_27048_1_0_0_0_0_0       MATURE            1         1.67            1         2.50            0         0.00                      14A6   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                          60                        40                        20                                          
                                                                                                                                               (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              40              20              60         100.00%
                     ----------      ----------      ----------                
                             40              20              60                



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