[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************
ID : mmu-mir-133a-1
DESCRIPTION : mmu-mir-133a-1 MI0000159 Mus musculus miR-133a-1 stem-loop
CHROMOSOME : 18
SPAN : 10782907 - 10782974
LENGTH : 68
SEQUENCE : GCTAAAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGC
OVERHANG THRESHOLD : 75%
*****************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-133a
ACCID : MI0000159
PARENT : mmu-mir-133a-1
CHROMOSOME : 18
START : 10782907
STOP : 10782974
OFFSET : 43..64
SEQUENCE : TTTGGTCCCCTTCAACCAGCTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-133a*
ACCID : MI0000159
PARENT : mmu-mir-133a-1
CHROMOSOME : 18
START : 10782907
STOP : 10782974
OFFSET : 7..27
SEQUENCE : GCTGGTAAAATGGAACCAAAT
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________
GCTAAAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGC REF 18 10782907 - 10782974
TTTGGTCCCCTTCAACCAGCTG MATURE 18 10782950 - 10783038 mmu-miR-133a -
GCTGGTAAAATGGAACCAAAT MATURESTAR 18 10782914 - 10783001 mmu-miR-133a* -
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................TGGTCCCCTTCAACCAGCTGT.... read_1962_5_11_7_2_3_6 MATURE 34 56.67 23 57.50 11 55.00 21
...........................................TTGGTCCCCTTCAACCAGCTGT.... read_403664_3_1_1_0_3_1 MATURE 9 15.00 5 12.50 4 20.00 22
...........................................TTGGTCCCCTTCAACCAGCTG..... read_278953_1_0_0_1_2_1 MATURE 5 8.33 1 2.50 4 20.00 21
.............................................GGTCCCCTTCAACCAGCTGT.... read_4787_2_2_0_0_0_0 MATURE 4 6.67 4 10.00 0 0.00 20
............................................TGGTCCCCTTCAACCAGCT...... read_330574_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 19
...........................................TTGGTCCCCTTCAACCAGt....... read_66069_0_0_1_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 t 18
............................................TGGTCCCCTTCAACCAG........ read_121282_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 17
............................................TGGTCCCCTTCAACCAGCTG..... read_324717_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 20
............................................TGGTCCCCTTCAACCAGCTGa.... read_362204_0_0_0_0_0_1 MATURE 1 1.67 0 0.00 1 5.00 a 20
............................................TGGTCCCCTTCAACCAGCTGc.... read_309899_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 c 20
...........................................TTGGTCCCCTTCAACCAGCTGc.... read_193920_0_1_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 c 21
............................................TGGTCCCCTTCAACaAGCTGT.... read_27048_1_0_0_0_0_0 MATURE 1 1.67 1 2.50 0 0.00 14A6
---------- ---------- ----------
60 40 20
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 40 20 60 100.00%
---------- ---------- ----------
40 20 60
[END]