[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************
ID                 : mmu-mir-132
DESCRIPTION        : mmu-mir-132 MI0000158 Mus musculus miR-132 stem-loop
CHROMOSOME         : 11
SPAN               : 74987184 - 74987249
LENGTH             : 66
SEQUENCE           : GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC
OVERHANG THRESHOLD : 75%
***************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-132
ACCID      : MI0000158
PARENT     : mmu-mir-132
CHROMOSOME : 11
START      : 74987184
STOP       : 74987249
OFFSET     : 42..63
SEQUENCE   : TAACAGTCTACAGCCATGGTCG
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________
GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC REF                  11                   74987184 - 74987249  
                                         TAACAGTCTACAGCCATGGTCG    MATURE               11                   74987226 - 74987312  mmu-miR-132          +                    
__________________________________________________________________

                                                              -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................AACAGTCTACAGCCATGGTCGt...   read_335065_7_10_5_9_13_11       MATURE           55        52.38           22        62.86           33        47.14            t           21   
..........................................AACAGTCTACAGCCATGGTCG....      read_310085_1_2_1_5_6_0       MATURE           15        14.29            4        11.43           11        15.71                        21   
..........................................AACAGTCTACAGCCATGGTCGtt..      read_358937_0_1_0_2_1_4       MATURE            8         7.62            1         2.86            7        10.00           tt           21   
..........................................AACAGTCTACAGCCATGGTC.....      read_136853_0_0_0_2_4_0       MATURE            6         5.71            0         0.00            6         8.57                        20   
..........................................AACAGTCTACAGCaATGGTCGt...       read_69098_0_1_0_0_0_1       MATURE            2         1.90            1         2.86            1         1.43            t         13A7   
..........................................AACAGTCTACAGCCATGGTCGa...      read_244140_0_0_0_1_0_1       MATURE            2         1.90            0         0.00            2         2.86            a           21   
..........................................AACAGTCTACAGCCATGGTCtt...      read_280917_0_0_1_0_1_0       MATURE            2         1.90            1         2.86            1         1.43           tt           20   
..........................................AACAGTCTACAGaCATGGTCGt...      read_323535_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.43            t         12A8   
...........................................ACAGTCTACAGCCATGGTCGt...      read_399935_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         1.43            t           20   
...........................................ACAGTCTACAGCCATGGTCG....      read_259946_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.43                        20   
..........................................AACAGTCTACAGCCATGGgCGt...      read_390286_0_0_1_0_0_0       MATURE            1         0.95            1         2.86            0         0.00            t         18G2   
..........................................AACAGTCTACAGCCATGGTagt...      read_397157_0_0_1_0_0_0       MATURE            1         0.95            1         2.86            0         0.00          agt           19   
..........................................AACAGTCTACAGCCATGGgtttt..       read_37962_0_0_1_0_0_0       MATURE            1         0.95            1         2.86            0         0.00        gtttt           18   
..........................................AACAGTCTACAGCCATGGTCGttt.      read_245542_0_0_1_0_0_0       MATURE            1         0.95            1         2.86            0         0.00          ttt           21   
..........................................AACtGTCTACAGCCATGGTCGt...      read_276656_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.43            t         3T17   
..........................................AACAGTCTACAGCCATGGTag....       read_33362_1_0_0_0_0_0       MATURE            1         0.95            1         2.86            0         0.00           ag           19   
..........................................AACAGTCTACAGCCATGGTCa....      read_298875_1_0_0_0_0_0       MATURE            1         0.95            1         2.86            0         0.00            a           20   
..........................................AACAGTCTACAGCCATGGTCGtta.       read_99005_0_0_0_0_1_0       MATURE            1         0.95            0         0.00            1         1.43          tta           21   
..........................................cACAGTCTACAGCCATGGTCG....      read_372132_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         1.43                        20   
..........................................AACAGTCTACAGCCATGGTCGtat.      read_315574_0_0_0_1_0_0       MATURE            1         0.95            0         0.00            1         1.43          tat           21   
..........................................AACAGTCTACAGCCATGGaCG....      read_188198_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.43                      18A2   
..........................................AACAGTCTACAGCCATGGTCGg...      read_207115_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.43            g           21   
                                                                                                                ----------                ----------                ----------   
                                                                                                                       105                        35                        70                                          
                                                                                                                                             (33.33)                   (66.67)                                       




*** OTHER ***
__________________________________________________________________
GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC REF                  11                   74987184 - 74987249  
                                         TAACAGTCTACAGCCATGGTCG    MATURE               11                   74987226 - 74987312  mmu-miR-132          +                    
__________________________________________________________________

                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....ACCGTGGCTTTCGATTGTTA..........................................   read_159836_0_0_0_2_1_3        OTHER            6        26.09            0         0.00            6        31.58                        20   
......CCGTGGCTTTCGATTGTTACT........................................   read_330457_2_0_0_1_2_1        OTHER            6        26.09            2        50.00            4        21.05                        21   
......CCGTGGCTTTCGATTGTTAC.........................................   read_283838_0_0_0_1_2_0        OTHER            3        13.04            0         0.00            3        15.79                        20   
.....ACCGTGGCTTTCGATTGTTAC.........................................   read_274079_0_0_0_0_2_0        OTHER            2         8.70            0         0.00            2        10.53                        21   
......CCGTtGCTTTCGATTGTTACT........................................   read_386838_0_0_0_0_0_1        OTHER            1         4.35            0         0.00            1         5.26                      4T16   
.....ACCGcGGCTTTCGATTGTTA..........................................   read_380362_0_0_0_0_0_1        OTHER            1         4.35            0         0.00            1         5.26                      4C15   
......CCGTGGCTTTCGATTGTTt..........................................   read_396695_0_0_0_0_1_0        OTHER            1         4.35            0         0.00            1         5.26            t           18   
......CCGTGGCTTTCGATcGTTACT........................................   read_373481_1_0_0_0_0_0        OTHER            1         4.35            1        25.00            0         0.00                      14C6   
.....ACCGTGGCTTTCGATTtTTAC.........................................    read_64713_0_0_0_0_0_1        OTHER            1         4.35            0         0.00            1         5.26                      16T4   
......aCGTGGCTTTCGATTGTTACT........................................   read_290163_0_0_1_0_0_0        OTHER            1         4.35            1        25.00            0         0.00                        20   
                                                                                                             ----------                ----------                ----------   
                                                                                                                     23                         4                        19                                          
                                                                                                                                          (17.39)                   (82.61)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              35              70             105          82.03%
          OTHER               4              19              23          17.97%
                     ----------      ----------      ----------                
                             39              89             128                



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