[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************************
ID                 : mmu-mir-128-2
DESCRIPTION        : mmu-mir-128-2 MI0000726 Mus musculus miR-128-2 stem-loop
CHROMOSOME         : 9
SPAN               : 112021140 - 112021215
LENGTH             : 76
SEQUENCE           : CAGTGGGAAGGGGGGCCGATGCACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTG
OVERHANG THRESHOLD : 75%
*************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-128
ACCID      : MI0000726
PARENT     : mmu-mir-128-2
CHROMOSOME : 9
START      : 112021140
STOP       : 112021215
OFFSET     : 48..68
SEQUENCE   : TCACAGTGAACCGGTCTCTTT
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________________
CAGTGGGAAGGGGGGCCGATGCACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTG REF                  9                    112021140 - 112021215 
                                               TCACAGTGAACCGGTCTCTTT         MATURE               9                    112021188 - 112021283 mmu-miR-128          -                    
____________________________________________________________________________

                                                                        -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................CACAGTGAACCGGTCTCTTT.........   read_103177_24_32_19_12_11_19       MATURE          117        51.77           75        50.68           42        53.85                        20   
................................................CACAGTGAACCGGTCTCTTTa........         read_238930_8_2_8_0_2_1       MATURE           21         9.29           18        12.16            3         3.85            a           20   
................................................CACAGTGAACCGGTCTCTT..........         read_284647_5_4_1_1_2_2       MATURE           15         6.64           10         6.76            5         6.41                        19   
................................................CACAGTGAACCGGTCTCTTTat.......         read_356917_2_4_2_0_3_2       MATURE           13         5.75            8         5.41            5         6.41           at           20   
................................................CACAGTGAACCGGTCTCTTTaa.......         read_243482_2_3_1_0_2_2       MATURE           10         4.42            6         4.05            4         5.13           aa           20   
................................................CACAGTGAACCGGTCTCTTat........         read_213720_0_4_1_0_2_0       MATURE            7         3.10            5         3.38            2         2.56           at           19   
................................................CACAGTGAACCGGTCTCT...........         read_128862_1_2_0_0_1_2       MATURE            6         2.65            3         2.03            3         3.85                        18   
................................................CACAGTGAACCGGTaTCTTT.........         read_336274_5_0_0_0_0_0       MATURE            5         2.21            5         3.38            0         0.00                      14A5   
................................................CACAGTGAACCGGTCTCTTa.........         read_136421_1_2_0_0_1_0       MATURE            4         1.77            3         2.03            1         1.28            a           19   
................................................CACAGTGAACCGGTCTCTTaa........         read_213271_2_0_1_0_0_0       MATURE            3         1.33            3         2.03            0         0.00           aa           19   
................................................CACAGgGAACCGGTCTCTTT.........          read_60309_0_0_0_0_1_1       MATURE            2         0.88            0         0.00            2         2.56                      5G14   
................................................CACAGTGAACCGGTCTCTTTg........         read_184510_0_0_0_1_0_1       MATURE            2         0.88            0         0.00            2         2.56            g           20   
................................................CACAGTGAACCGGTCTCTTaat.......         read_201980_0_2_0_0_0_0       MATURE            2         0.88            2         1.35            0         0.00          aat           19   
................................................tACAGTGAACCGGTCTCTTT.........         read_389316_1_0_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00                        19   
................................................CACAGTGAACCGGTCTCTTTC........         read_381752_1_0_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00                        21   
................................................CACAGTGAACCGGTCTCTTTag.......         read_181861_0_0_1_0_0_0       MATURE            1         0.44            1         0.68            0         0.00           ag           20   
................................................CACAGTGAACCGGTCTCTg..........         read_300397_0_0_0_0_0_1       MATURE            1         0.44            0         0.00            1         1.28            g           18   
................................................CACAGTGAACCGGTCTCTTTaat......          read_20957_0_0_0_1_0_0       MATURE            1         0.44            0         0.00            1         1.28          aat           20   
................................................CACAGcGAACCGGTCTCTTT.........         read_312654_0_0_0_0_1_0       MATURE            1         0.44            0         0.00            1         1.28                      5C14   
................................................CACAGTGAACCGGTCTCTTTaaa......         read_291100_0_0_1_0_0_0       MATURE            1         0.44            1         0.68            0         0.00          aaa           20   
................................................CACAGTGtACCGGTCTCTTTCtt......           read_7161_0_0_0_0_0_1       MATURE            1         0.44            0         0.00            1         1.28           tt         7T13   
................................................CACAGTGAACCGGTCTCTTct........         read_167054_1_0_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00           ct           19   
................................................CACAGTGAACCGGTCTCTTTatt......         read_354474_0_1_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00          att           20   
................................................CACAGTGAACCGGTCTCTTTaaaa.....         read_361004_0_0_0_1_0_0       MATURE            1         0.44            0         0.00            1         1.28         aaaa           20   
................................................CACAGTGAACCGGgCTCTTT.........          read_77542_0_1_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00                      13G6   
................................................CACAGTGAgCCGGTCTCTTT.........          read_34083_0_0_0_0_1_0       MATURE            1         0.44            0         0.00            1         1.28                      8G11   
................................................CACAGTGgACCGGTCTCTTT.........         read_342575_0_0_0_0_0_1       MATURE            1         0.44            0         0.00            1         1.28                      7G12   
................................................CACAGTGAACCGGTCTCTTTataa.....         read_140203_0_0_0_0_1_0       MATURE            1         0.44            0         0.00            1         1.28         ataa           20   
................................................CACAGTGAACCGGTCTCTTTgt.......         read_286748_0_0_1_0_0_0       MATURE            1         0.44            1         0.68            0         0.00           gt           20   
................................................CACgGTGAACCGGTCTCTTT.........          read_11306_0_0_0_0_0_1       MATURE            1         0.44            0         0.00            1         1.28                      3G16   
................................................CACAGTGAACCGGTCTCTTgtat......         read_288171_1_0_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00         gtat           19   
................................................CACAGTGAACCGGTCTCTTca........         read_129196_1_0_0_0_0_0       MATURE            1         0.44            1         0.68            0         0.00           ca           19   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                    226                       148                        78                                          
                                                                                                                                                          (65.49)                   (34.51)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             148              78             226         100.00%
                     ----------      ----------      ----------                
                            148              78             226                



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