[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************
ID                 : mmu-mir-128-1
DESCRIPTION        : mmu-mir-128-1 MI0000155 Mus musculus miR-128-1 stem-loop
CHROMOSOME         : 1
SPAN               : 130098938 - 130099007
LENGTH             : 70
SEQUENCE           : GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-128
ACCID      : MI0000155
PARENT     : mmu-mir-128-1
CHROMOSOME : 1
START      : 130098938
STOP       : 130099007
OFFSET     : 44..64
SEQUENCE   : TCACAGTGAACCGGTCTCTTT
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________
GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC REF                  1                    130098938 - 130099007 
                                           TCACAGTGAACCGGTCTCTTT       MATURE               1                    130098982 - 130099071 mmu-miR-128          +                    
______________________________________________________________________

                                                                  -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................CACAGTGAACCGGTCTCTTT.......   read_103177_24_32_19_12_11_19       MATURE          117        36.45           75        33.94           42        42.00                        20   
............................................CACAGTGAACCGGTCTCTTTT......       read_399728_22_18_7_2_7_5       MATURE           61        19.00           47        21.27           14        14.00                        21   
............................................CACAGTGAACCGGTCTCTTTTT.....         read_189969_2_9_7_1_3_2       MATURE           24         7.48           18         8.14            6         6.00                        22   
............................................CACAGTGAACCGGTCTCTTTa......         read_238930_8_2_8_0_2_1       MATURE           21         6.54           18         8.14            3         3.00            a           20   
............................................CACAGTGAACCGGTCTCTT........         read_284647_5_4_1_1_2_2       MATURE           15         4.67           10         4.52            5         5.00                        19   
............................................CACAGTGAACCGGTCTCTTTat.....         read_356917_2_4_2_0_3_2       MATURE           13         4.05            8         3.62            5         5.00           at           20   
............................................CACAGTGAACCGGTCTCTTTaa.....         read_243482_2_3_1_0_2_2       MATURE           10         3.12            6         2.71            4         4.00           aa           20   
............................................CACAGTGAACCGGTCTCTTat......         read_213720_0_4_1_0_2_0       MATURE            7         2.18            5         2.26            2         2.00           at           19   
............................................CACAGTGAACCGGTCTCT.........         read_128862_1_2_0_0_1_2       MATURE            6         1.87            3         1.36            3         3.00                        18   
............................................CACAGTGAACCGGTaTCTTT.......         read_336274_5_0_0_0_0_0       MATURE            5         1.56            5         2.26            0         0.00                      14A5   
............................................CACAGTGAACCGGTCTCTTa.......         read_136421_1_2_0_0_1_0       MATURE            4         1.25            3         1.36            1         1.00            a           19   
............................................CACAGTGAACCGGTCTCTTaa......         read_213271_2_0_1_0_0_0       MATURE            3         0.93            3         1.36            0         0.00           aa           19   
............................................CACAGTGAACCGGTCTCTTaat.....         read_201980_0_2_0_0_0_0       MATURE            2         0.62            2         0.90            0         0.00          aat           19   
............................................CACAGTGAACCGGTCTCTTTTa.....         read_222024_0_1_1_0_0_0       MATURE            2         0.62            2         0.90            0         0.00            a           21   
............................................CACAGgGAACCGGTCTCTTT.......          read_60309_0_0_0_0_1_1       MATURE            2         0.62            0         0.00            2         2.00                      5G14   
............................................CACAGTGAACCGGTCTCTTTg......         read_184510_0_0_0_1_0_1       MATURE            2         0.62            0         0.00            2         2.00            g           20   
............................................CACAGTGAACCGGTgTCTTTT......         read_338246_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      14G6   
............................................CACAGcGAACCGGTCTCTTT.......         read_312654_0_0_0_0_1_0       MATURE            1         0.31            0         0.00            1         1.00                      5C14   
............................................CACAGTGAACCGGTCTCTTTaat....          read_20957_0_0_0_1_0_0       MATURE            1         0.31            0         0.00            1         1.00          aat           20   
............................................CACAGTGAACCGGTCTCTTct......         read_167054_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00           ct           19   
............................................CACAGTGAACCGGTCTCTTTTTt....         read_410204_0_0_1_0_0_0       MATURE            1         0.31            1         0.45            0         0.00            t           22   
............................................tACAGTGAACCGGTCTCTTT.......         read_389316_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                        19   
............................................CACAGTGAgCCGGTCTCTTTT......         read_192232_0_1_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      8G12   
............................................CACAGTGAACCGGgCTCTTT.......          read_77542_0_1_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      13G6   
............................................CACAGTGAACCGcTCTCTTTT......         read_405246_0_1_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      12C8   
............................................CACAGTGAACCGGTCTCTTTaaa....         read_291100_0_0_1_0_0_0       MATURE            1         0.31            1         0.45            0         0.00          aaa           20   
............................................CACAGTGAACCGGTCTCTTTaTC....         read_236357_0_1_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      20A2   
............................................CACAGTGAgCCGGTCTCTTT.......          read_34083_0_0_0_0_1_0       MATURE            1         0.31            0         0.00            1         1.00                      8G11   
............................................CACAGTGAACCGGTCTCTTTataa...         read_140203_0_0_0_0_1_0       MATURE            1         0.31            0         0.00            1         1.00         ataa           20   
............................................CACAGTGAACCGGTCTCTTTTaa....         read_290946_0_0_0_0_1_0       MATURE            1         0.31            0         0.00            1         1.00           aa           21   
............................................CACAGTGAACCGGTCTCTg........         read_300397_0_0_0_0_0_1       MATURE            1         0.31            0         0.00            1         1.00            g           18   
............................................CACAGgGAACCGGTCTCTTTTT.....         read_390686_0_0_0_0_0_1       MATURE            1         0.31            0         0.00            1         1.00                      5G16   
............................................CACAGTGAACCGGTCTCTTTag.....         read_181861_0_0_1_0_0_0       MATURE            1         0.31            1         0.45            0         0.00           ag           20   
............................................CACAGTGgACCGGTCTCTTT.......         read_342575_0_0_0_0_0_1       MATURE            1         0.31            0         0.00            1         1.00                      7G12   
............................................CACAGTGAACCGGTCTCTTTatt....         read_354474_0_1_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00          att           20   
............................................CACAGTGAACCGGTCTCTTTgt.....         read_286748_0_0_1_0_0_0       MATURE            1         0.31            1         0.45            0         0.00           gt           20   
............................................CACAGTGAACCGGTCTCTTTaaaa...         read_361004_0_0_0_1_0_0       MATURE            1         0.31            0         0.00            1         1.00         aaaa           20   
............................................CACAGTGAACCGGTCTCTTca......         read_129196_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00           ca           19   
............................................CACAGTGAACCGGTCTCTTgtat....         read_288171_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00         gtat           19   
............................................CACAGTGAACCGGTaTCTTTT......         read_103642_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00                      14A6   
............................................CACAGTGAACCGGTCTCTTTTat....         read_232750_0_0_0_0_0_1       MATURE            1         0.31            0         0.00            1         1.00           at           21   
............................................CACAGTGAACCGGTCTCTTTTTa....         read_320212_1_0_0_0_0_0       MATURE            1         0.31            1         0.45            0         0.00            a           22   
............................................CACgGTGAACCGGTCTCTTT.......          read_11306_0_0_0_0_0_1       MATURE            1         0.31            0         0.00            1         1.00                      3G16   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                              321                       221                       100                                          
                                                                                                                                                    (68.85)                   (31.15)                                       




*** OTHER ***
______________________________________________________________________
GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC REF                  1                    130098938 - 130099007 
                                           TCACAGTGAACCGGTCTCTTT       MATURE               1                    130098982 - 130099071 mmu-miR-128          +                    
______________________________________________________________________

                                                                  -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........GGGGCCGTAGCACTGTCTGAGA........................................   read_315942_1_1_0_0_0_0        OTHER            2        66.67            2        66.67            0            0                        22   
.........GGGGCCaTAGCACTGTCTGA..........................................   read_278513_0_1_0_0_0_0        OTHER            1        33.33            1        33.33            0            0                      6A13   
                                                                                                                 ----------                ----------                ----------   
                                                                                                                          3                         3                         0                                          
                                                                                                                                             (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             221             100             321          99.07%
          OTHER               3               0               3           0.93%
                     ----------      ----------      ----------                
                            224             100             324                



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