[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-128-1
DESCRIPTION : mmu-mir-128-1 MI0000155 Mus musculus miR-128-1 stem-loop
CHROMOSOME : 1
SPAN : 130098938 - 130099007
LENGTH : 70
SEQUENCE : GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-128
ACCID : MI0000155
PARENT : mmu-mir-128-1
CHROMOSOME : 1
START : 130098938
STOP : 130099007
OFFSET : 44..64
SEQUENCE : TCACAGTGAACCGGTCTCTTT
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________
GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC REF 1 130098938 - 130099007
TCACAGTGAACCGGTCTCTTT MATURE 1 130098982 - 130099071 mmu-miR-128 +
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................CACAGTGAACCGGTCTCTTT....... read_103177_24_32_19_12_11_19 MATURE 117 36.45 75 33.94 42 42.00 20
............................................CACAGTGAACCGGTCTCTTTT...... read_399728_22_18_7_2_7_5 MATURE 61 19.00 47 21.27 14 14.00 21
............................................CACAGTGAACCGGTCTCTTTTT..... read_189969_2_9_7_1_3_2 MATURE 24 7.48 18 8.14 6 6.00 22
............................................CACAGTGAACCGGTCTCTTTa...... read_238930_8_2_8_0_2_1 MATURE 21 6.54 18 8.14 3 3.00 a 20
............................................CACAGTGAACCGGTCTCTT........ read_284647_5_4_1_1_2_2 MATURE 15 4.67 10 4.52 5 5.00 19
............................................CACAGTGAACCGGTCTCTTTat..... read_356917_2_4_2_0_3_2 MATURE 13 4.05 8 3.62 5 5.00 at 20
............................................CACAGTGAACCGGTCTCTTTaa..... read_243482_2_3_1_0_2_2 MATURE 10 3.12 6 2.71 4 4.00 aa 20
............................................CACAGTGAACCGGTCTCTTat...... read_213720_0_4_1_0_2_0 MATURE 7 2.18 5 2.26 2 2.00 at 19
............................................CACAGTGAACCGGTCTCT......... read_128862_1_2_0_0_1_2 MATURE 6 1.87 3 1.36 3 3.00 18
............................................CACAGTGAACCGGTaTCTTT....... read_336274_5_0_0_0_0_0 MATURE 5 1.56 5 2.26 0 0.00 14A5
............................................CACAGTGAACCGGTCTCTTa....... read_136421_1_2_0_0_1_0 MATURE 4 1.25 3 1.36 1 1.00 a 19
............................................CACAGTGAACCGGTCTCTTaa...... read_213271_2_0_1_0_0_0 MATURE 3 0.93 3 1.36 0 0.00 aa 19
............................................CACAGTGAACCGGTCTCTTaat..... read_201980_0_2_0_0_0_0 MATURE 2 0.62 2 0.90 0 0.00 aat 19
............................................CACAGTGAACCGGTCTCTTTTa..... read_222024_0_1_1_0_0_0 MATURE 2 0.62 2 0.90 0 0.00 a 21
............................................CACAGgGAACCGGTCTCTTT....... read_60309_0_0_0_0_1_1 MATURE 2 0.62 0 0.00 2 2.00 5G14
............................................CACAGTGAACCGGTCTCTTTg...... read_184510_0_0_0_1_0_1 MATURE 2 0.62 0 0.00 2 2.00 g 20
............................................CACAGTGAACCGGTgTCTTTT...... read_338246_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 14G6
............................................CACAGcGAACCGGTCTCTTT....... read_312654_0_0_0_0_1_0 MATURE 1 0.31 0 0.00 1 1.00 5C14
............................................CACAGTGAACCGGTCTCTTTaat.... read_20957_0_0_0_1_0_0 MATURE 1 0.31 0 0.00 1 1.00 aat 20
............................................CACAGTGAACCGGTCTCTTct...... read_167054_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 ct 19
............................................CACAGTGAACCGGTCTCTTTTTt.... read_410204_0_0_1_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 t 22
............................................tACAGTGAACCGGTCTCTTT....... read_389316_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 19
............................................CACAGTGAgCCGGTCTCTTTT...... read_192232_0_1_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 8G12
............................................CACAGTGAACCGGgCTCTTT....... read_77542_0_1_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 13G6
............................................CACAGTGAACCGcTCTCTTTT...... read_405246_0_1_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 12C8
............................................CACAGTGAACCGGTCTCTTTaaa.... read_291100_0_0_1_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 aaa 20
............................................CACAGTGAACCGGTCTCTTTaTC.... read_236357_0_1_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 20A2
............................................CACAGTGAgCCGGTCTCTTT....... read_34083_0_0_0_0_1_0 MATURE 1 0.31 0 0.00 1 1.00 8G11
............................................CACAGTGAACCGGTCTCTTTataa... read_140203_0_0_0_0_1_0 MATURE 1 0.31 0 0.00 1 1.00 ataa 20
............................................CACAGTGAACCGGTCTCTTTTaa.... read_290946_0_0_0_0_1_0 MATURE 1 0.31 0 0.00 1 1.00 aa 21
............................................CACAGTGAACCGGTCTCTg........ read_300397_0_0_0_0_0_1 MATURE 1 0.31 0 0.00 1 1.00 g 18
............................................CACAGgGAACCGGTCTCTTTTT..... read_390686_0_0_0_0_0_1 MATURE 1 0.31 0 0.00 1 1.00 5G16
............................................CACAGTGAACCGGTCTCTTTag..... read_181861_0_0_1_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 ag 20
............................................CACAGTGgACCGGTCTCTTT....... read_342575_0_0_0_0_0_1 MATURE 1 0.31 0 0.00 1 1.00 7G12
............................................CACAGTGAACCGGTCTCTTTatt.... read_354474_0_1_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 att 20
............................................CACAGTGAACCGGTCTCTTTgt..... read_286748_0_0_1_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 gt 20
............................................CACAGTGAACCGGTCTCTTTaaaa... read_361004_0_0_0_1_0_0 MATURE 1 0.31 0 0.00 1 1.00 aaaa 20
............................................CACAGTGAACCGGTCTCTTca...... read_129196_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 ca 19
............................................CACAGTGAACCGGTCTCTTgtat.... read_288171_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 gtat 19
............................................CACAGTGAACCGGTaTCTTTT...... read_103642_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 14A6
............................................CACAGTGAACCGGTCTCTTTTat.... read_232750_0_0_0_0_0_1 MATURE 1 0.31 0 0.00 1 1.00 at 21
............................................CACAGTGAACCGGTCTCTTTTTa.... read_320212_1_0_0_0_0_0 MATURE 1 0.31 1 0.45 0 0.00 a 22
............................................CACgGTGAACCGGTCTCTTT....... read_11306_0_0_0_0_0_1 MATURE 1 0.31 0 0.00 1 1.00 3G16
---------- ---------- ----------
321 221 100
(68.85) (31.15)
*** OTHER ***
______________________________________________________________________
GTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGC REF 1 130098938 - 130099007
TCACAGTGAACCGGTCTCTTT MATURE 1 130098982 - 130099071 mmu-miR-128 +
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........GGGGCCGTAGCACTGTCTGAGA........................................ read_315942_1_1_0_0_0_0 OTHER 2 66.67 2 66.67 0 0 22
.........GGGGCCaTAGCACTGTCTGA.......................................... read_278513_0_1_0_0_0_0 OTHER 1 33.33 1 33.33 0 0 6A13
---------- ---------- ----------
3 3 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 221 100 321 99.07%
OTHER 3 0 3 0.93%
---------- ---------- ----------
224 100 324
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