[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************
ID : mmu-mir-126
DESCRIPTION : mmu-mir-126 MI0000153 Mus musculus miR-126 stem-loop
CHROMOSOME : 2
SPAN : 26446877 - 26446949
LENGTH : 73
SEQUENCE : TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA
OVERHANG THRESHOLD : 75%
**********************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-126-3p
ACCID : MI0000153
PARENT : mmu-mir-126
CHROMOSOME : 2
START : 26446877
STOP : 26446949
OFFSET : 46..67
SEQUENCE : TCGTACCGTGAGTAATAATGCG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-126-5p
ACCID : MI0000153
PARENT : mmu-mir-126
CHROMOSOME : 2
START : 26446877
STOP : 26446949
OFFSET : 9..29
SEQUENCE : CATTATTACTTTTGGTACGCG
STRAND : +
******************************
*** MATURE-3P ***
_________________________________________________________________________
TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA REF 2 26446877 - 26446949
TCGTACCGTGAGTAATAATGCG MATURE-3P 2 26446923 - 26447016 mmu-miR-126-3p +
CATTATTACTTTTGGTACGCG MATURE-5P 2 26446886 - 26446978 mmu-miR-126-5p +
_________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................CGTACCGTGAGTAATAATGCG....... read_405276_7_11_8_3_2_3 MATURE-3P 34 29.82 26 30.23 8 28.57 21
...............................................GTACCGTGAGTAATAATGCGt...... read_267196_0_6_4_1_4_3 MATURE-3P 18 15.79 10 11.63 8 28.57 t 20
...............................................GTACCGTGAGTAATAATGCG....... read_43636_6_5_3_1_1_1 MATURE-3P 17 14.91 14 16.28 3 10.71 20
..............................................CGTACCGTGAGTAATAATGC........ read_31094_5_1_0_0_0_1 MATURE-3P 7 6.14 6 6.98 1 3.57 20
..............................................CGTACCGTGAGTAATAATGCGa...... read_139120_4_0_1_1_0_0 MATURE-3P 6 5.26 5 5.81 1 3.57 a 21
..............................................CGTACCGTGAGTAATAATG......... read_10885_2_1_0_1_0_1 MATURE-3P 5 4.39 3 3.49 2 7.14 19
...............................................GTACCGTGAGTAATAATGCGa...... read_282722_2_0_2_0_1_0 MATURE-3P 5 4.39 4 4.65 1 3.57 a 20
..............................................CGTACCGTGAGTAATAATGCGt...... read_25970_1_0_1_0_0_2 MATURE-3P 4 3.51 2 2.33 2 7.14 t 21
...............................................GTACCGTGAGTAATAATGC........ read_171333_2_0_2_0_0_0 MATURE-3P 4 3.51 4 4.65 0 0.00 19
..............................................CGTACCGTGAGTAATAATGa........ read_300416_0_1_1_0_0_0 MATURE-3P 2 1.75 2 2.33 0 0.00 a 19
...............................................GTACCGTGAGTAATAATGCt....... read_317202_0_0_0_0_1_0 MATURE-3P 1 0.88 0 0.00 1 3.57 t 19
...............................................GTACCGTGAGTAATAATGa........ read_57822_1_0_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 a 18
...............................................GTACCGTGAGTAATAATGCc....... read_287408_1_0_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 c 19
..............................................CGTACCGTGAGTAATAAT.......... read_69715_0_1_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 18
..............................................CGTACCtTGAGTAATAATGCG....... read_359057_1_0_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 6T14
..............................................CGTACaGTGAGTAATAATGCGt...... read_194843_0_1_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 t 5A15
..............................................CGTACCGTGAGTAATAATGCt....... read_347893_0_0_1_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 t 20
..............................................CGTACCGTGAGTAATAATta........ read_370510_0_0_0_0_1_0 MATURE-3P 1 0.88 0 0.00 1 3.57 ta 18
..............................................CGTACCGTGgGTAATAATGCG....... read_115497_0_0_1_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 9G11
..............................................CGTACCGTGAGTAATAATtCG....... read_270908_1_0_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 18T2
...............................................GTACCGTGAGTAATAATG......... read_132439_0_0_1_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 18
..............................................CGgACCGTGAGTAATAATGCGa...... read_135201_1_0_0_0_0_0 MATURE-3P 1 0.88 1 1.16 0 0.00 a 2G18
---------- ---------- ----------
114 86 28
(75.44) (24.56)
*** MATURE-5P ***
_________________________________________________________________________
TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA REF 2 26446877 - 26446949
TCGTACCGTGAGTAATAATGCG MATURE-3P 2 26446923 - 26447016 mmu-miR-126-3p +
CATTATTACTTTTGGTACGCG MATURE-5P 2 26446886 - 26446978 mmu-miR-126-5p +
_________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........ATTATTACTTTTGGTACGCG............................................. read_326801_1_5_3_0_0_2 MATURE-5P 11 35.48 9 32.14 2 66.67 20
.........ATTATTACTTTTGtTACGCG............................................. read_308387_0_2_3_0_0_0 MATURE-5P 5 16.13 5 17.86 0 0.00 13T6
.........ATTATTACTTTTGGTACGCGt............................................ read_85510_2_1_0_0_1_0 MATURE-5P 4 12.90 3 10.71 1 33.33 t 20
.........ATTATTACTTTTGGTACGC.............................................. read_342025_3_0_0_0_0_0 MATURE-5P 3 9.68 3 10.71 0 0.00 19
.........ATTATTACTTTTGGTACGCGa............................................ read_113220_2_0_0_0_0_0 MATURE-5P 2 6.45 2 7.14 0 0.00 a 20
.........ATTATTACTTTTGGTACG............................................... read_93569_1_1_0_0_0_0 MATURE-5P 2 6.45 2 7.14 0 0.00 18
.........ATTATTACTTTTGGTACtCG............................................. read_57313_0_1_0_0_0_0 MATURE-5P 1 3.23 1 3.57 0 0.00 17T2
.........ATTATTACTTTTGGTACGCaa............................................ read_109569_0_0_1_0_0_0 MATURE-5P 1 3.23 1 3.57 0 0.00 aa 19
.........ATTATTACTTTTGGTtCGCG............................................. read_317901_0_0_1_0_0_0 MATURE-5P 1 3.23 1 3.57 0 0.00 15T4
.........ATTATTACTTTTGGTACGCGC............................................ read_281996_1_0_0_0_0_0 MATURE-5P 1 3.23 1 3.57 0 0.00 21
---------- ---------- ----------
31 28 3
(90.32) (9.68)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 86 28 114 78.62%
MATURE-5P 28 3 31 21.38%
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114 31 145
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