[BEGIN]

REFERENCE HAIRPIN
**************************************************************************************************
ID                 : mmu-mir-125b-1
DESCRIPTION        : mmu-mir-125b-1 MI0000725 Mus musculus miR-125b-1 stem-loop
CHROMOSOME         : 9
SPAN               : 41390009 - 41390085
LENGTH             : 77
SEQUENCE           : TGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTG
OVERHANG THRESHOLD : 75%
**************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-125b-3p
ACCID      : MI0000725
PARENT     : mmu-mir-125b-1
CHROMOSOME : 9
START      : 41390009
STOP       : 41390085
OFFSET     : 55..76
SEQUENCE   : ACGGGTTAGGCTCTTGGGAGCT
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-125b-5p
ACCID      : MI0000725
PARENT     : mmu-mir-125b-1
CHROMOSOME : 9
START      : 41390009
STOP       : 41390085
OFFSET     : 15..36
SEQUENCE   : TCCCTGAGACCCTAACTTGTGA
STRAND     : +
******************************



*** MATURE-3P ***
_____________________________________________________________________________
TGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTG REF                  9                    41390009 - 41390085  
                                                      ACGGGTTAGGCTCTTGGGAGCT  MATURE-3P            9                    41390064 - 41390161  mmu-miR-125b-3p      +                    
              TCCCTGAGACCCTAACTTGTGA                                          MATURE-5P            9                    41390024 - 41390121  mmu-miR-125b-5p      +                    
_____________________________________________________________________________

                                                                         -SEQ-                   -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................................................CGGGTTAGGCTCTTcGGAGC...   read_90264_0_0_0_0_0_1    MATURE-3P            1       100.00            0            0            1       100.00                      14C5   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                                1                         0                         1                                          
                                                                                                                                                     (0.00)                  (100.00)                                       




*** MATURE-5P ***
_____________________________________________________________________________
TGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTG REF                  9                    41390009 - 41390085  
                                                      ACGGGTTAGGCTCTTGGGAGCT  MATURE-3P            9                    41390064 - 41390161  mmu-miR-125b-3p      +                    
              TCCCTGAGACCCTAACTTGTGA                                          MATURE-5P            9                    41390024 - 41390121  mmu-miR-125b-5p      +                    
_____________________________________________________________________________

                                                                         -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............CCCTGAGACCCTAACTTGTGA..........................................   read_146603_4_8_3_2_3_3    MATURE-5P           23        43.40           15        37.50            8        61.54                        21   
...............CCCTGAGACCCTAACTTGT............................................   read_394263_3_9_5_4_0_0    MATURE-5P           21        39.62           17        42.50            4        30.77                        19   
...............CCCTGAGACCCTAACTTGTGt..........................................   read_194493_0_0_2_1_0_0    MATURE-5P            3         5.66            2         5.00            1         7.69            t           20   
................CCTGAGACCCTAACTTGTGc..........................................   read_391619_0_0_1_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00            c           19   
...............CCCTGAGACCCTAACTTG.............................................   read_350822_0_0_1_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00                        18   
...............CCCTGAGACCCTAACTTGTGAT.........................................   read_205193_0_1_0_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00                        22   
...............CCCTGAGACCCTAACTTGTG...........................................   read_242188_0_0_1_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00                        20   
..............TCCCTGAGACCCTAACTTGTGA..........................................   read_173459_0_1_0_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00                        22   
................CCTGAGACCCTAACTTGTGA..........................................   read_176671_1_0_0_0_0_0    MATURE-5P            1         1.89            1         2.50            0         0.00                        20   
                                                                                                                        ----------                ----------                ----------   
                                                                                                                                53                        40                        13                                          
                                                                                                                                                     (75.47)                   (24.53)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               0               1               1           1.85%
      MATURE-5P              40              13              53          98.15%
                     ----------      ----------      ----------                
                             40              14              54                



[END]
