[BEGIN]

REFERENCE HAIRPIN
*****************************************************************************************
ID                 : mmu-mir-125a
DESCRIPTION        : mmu-mir-125a MI0000151 Mus musculus miR-125a stem-loop
CHROMOSOME         : 17
SPAN               : 17967776 - 17967843
LENGTH             : 68
SEQUENCE           : CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG
OVERHANG THRESHOLD : 75%
*****************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-125a-3p
ACCID      : MI0000151
PARENT     : mmu-mir-125a
CHROMOSOME : 17
START      : 17967776
STOP       : 17967843
OFFSET     : 44..65
SEQUENCE   : ACAGGTGAGGTTCTTGGGAGCC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-125a-5p
ACCID      : MI0000151
PARENT     : mmu-mir-125a
CHROMOSOME : 17
START      : 17967776
STOP       : 17967843
OFFSET     : 6..29
SEQUENCE   : TCCCTGAGACCCTTTAACCTGTGA
STRAND     : +
******************************



*** MATURE-3P ***
____________________________________________________________________
CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG REF                  17                   17967776 - 17967843  
                                           ACAGGTGAGGTTCTTGGGAGCC    MATURE-3P            17                   17967820 - 17967908  mmu-miR-125a-3p      +                    
     TCCCTGAGACCCTTTAACCTGTGA                                        MATURE-5P            17                   17967782 - 17967872  mmu-miR-125a-5p      +                    
____________________________________________________________________

                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................CAGGTGAGGTTCTTGGGAGC.....   read_350164_1_1_0_1_0_0    MATURE-3P            3        60.00            2        66.67            1        50.00                        20   
............................................CAGGTGAGGTTCTTGGGAGCCTtt.   read_108313_0_1_0_0_0_0    MATURE-3P            1        20.00            1        33.33            0         0.00           tt           22   
............................................CAGGTGAGGTTCTTGGGAGCC....   read_405085_0_0_0_0_0_1    MATURE-3P            1        20.00            0         0.00            1        50.00                        21   
                                                                                                               ----------                ----------                ----------   
                                                                                                                        5                         3                         2                                          
                                                                                                                                            (60.00)                   (40.00)                                       




*** MATURE-5P ***
____________________________________________________________________
CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG REF                  17                   17967776 - 17967843  
                                           ACAGGTGAGGTTCTTGGGAGCC    MATURE-3P            17                   17967820 - 17967908  mmu-miR-125a-3p      +                    
     TCCCTGAGACCCTTTAACCTGTGA                                        MATURE-5P            17                   17967782 - 17967872  mmu-miR-125a-5p      +                    
____________________________________________________________________

                                                                -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......CCCTGAGACCCTTTAACCTGT..........................................   read_298028_71_64_39_26_27_44    MATURE-5P          271        57.91          174        55.77           97        62.18                        21   
......CCCTGAGACCCTTTAACCTGTGA........................................      read_126324_22_10_14_4_1_9    MATURE-5P           60        12.82           46        14.74           14         8.97                        23   
......CCCTGAGACCCTTTAACCTGTGt........................................         read_112307_9_8_3_4_2_4    MATURE-5P           30         6.41           20         6.41           10         6.41            t           22   
......CCCTGAGACCCTTTAACCTGTG.........................................          read_87439_9_6_6_5_0_3    MATURE-5P           29         6.20           21         6.73            8         5.13                        22   
......CCCTGAGACCCTTTAACCTG...........................................         read_165066_1_5_3_1_1_1    MATURE-5P           12         2.56            9         2.88            3         1.92                        20   
......CCCTGAGACCCTTTAACC.............................................         read_134320_0_1_0_2_3_1    MATURE-5P            7         1.50            1         0.32            6         3.85                        18   
......CCCTGAGACCCTTTAAC..............................................         read_193425_0_3_1_0_2_1    MATURE-5P            7         1.50            4         1.28            3         1.92                        17   
......CCCTGAGACCCTTTAACCTGTt.........................................         read_115545_1_1_2_0_0_0    MATURE-5P            4         0.85            4         1.28            0         0.00            t           21   
......CCCTGAGACCCTTTAACCTtt..........................................         read_269673_1_0_0_0_1_1    MATURE-5P            3         0.64            1         0.32            2         1.28           tt           19   
......CCCTGAGACCCTTTgACCTGT..........................................         read_271022_3_0_0_0_0_0    MATURE-5P            3         0.64            3         0.96            0         0.00                      14G6   
......CCCTGAGACCCTTTAACaTGT..........................................          read_66219_0_1_0_0_1_0    MATURE-5P            2         0.43            1         0.32            1         0.64                      17A3   
......aCCTGAGACCCTTTAACCTGT..........................................         read_173915_0_1_0_1_0_0    MATURE-5P            2         0.43            1         0.32            1         0.64                        20   
.........TGAGACCCTTTAACCTGTGA........................................         read_262992_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                        20   
......CCCTGAGACCCTTTAACCcGTGA........................................         read_259258_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      18C4   
......CCCTGAcACCCTTTAACCTGT..........................................         read_233520_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      6C14   
......CCCTGAGACCCTTTAACCTGg..........................................         read_182183_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            g           20   
......CCCTGAGACCCTTTAACCTGa..........................................         read_174744_0_0_0_0_1_0    MATURE-5P            1         0.21            0         0.00            1         0.64            a           20   
......CCCTGAGACCCTTTAACCTGTc.........................................          read_77977_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            c           21   
......CCCTGAGACCCTTTtACCTGTtt........................................         read_208265_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00           tt         14T6   
......CCCTGAGACCCTTTAACCgGTG.........................................         read_384914_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      18G3   
.........TGAGACCCTTTAACCTGTt.........................................         read_203428_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            t           18   
......CCCTGAGACCCTTTAACCT............................................         read_411063_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                        19   
......CCCTGAGACCCTTTAACtTGTG.........................................         read_377624_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      17T4   
......CCCTGAGACCCcTTAACCTGT..........................................         read_206934_0_0_0_0_0_1    MATURE-5P            1         0.21            0         0.00            1         0.64                      11C9   
......CCCTGAGACCCTTTgACCTGTG.........................................         read_228187_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      14G7   
......CCCTGAGACCCTTTAAtCTGT..........................................         read_199916_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      16T4   
......CCCTGAGACCCTTTAgCCTGT..........................................         read_225402_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      15G5   
..........GAGACCCTTTAACCTGT..........................................          read_84610_0_0_0_0_0_1    MATURE-5P            1         0.21            0         0.00            1         0.64                        17   
......CCCTGAGACCCTTTAACCTat..........................................          read_22937_0_0_0_1_0_0    MATURE-5P            1         0.21            0         0.00            1         0.64           at           19   
......CCCTGAGACCCTTTgACCTGTGA........................................         read_344726_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      14G8   
......CCCTGAGACCCTcTAACCTGTGt........................................         read_144516_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            t         12C9   
......CCCTGAGACCCTTTAgCCTGTGt........................................          read_27036_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            t         15G6   
......tCCTGAGACCCTTTAACCTG...........................................         read_186716_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                        19   
......CCCTGtGACCCTTTAACCTGTGt........................................         read_152254_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            t         5T16   
......CCCTGAGACCCTTTAACCTGc..........................................         read_211721_0_0_0_0_1_0    MATURE-5P            1         0.21            0         0.00            1         0.64            c           20   
......CCCTGAGACCCTTTAACCTGTa.........................................          read_55614_0_0_0_0_0_1    MATURE-5P            1         0.21            0         0.00            1         0.64            a           21   
.....TCCCTGAGACCCTTTAACCTGT..........................................         read_272433_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                        22   
......CCCTGAGcCCCTTTAACCTGTGt........................................          read_11744_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00            t         7C14   
......CCCTGAGAaCCTTTAACCTGTGA........................................         read_368444_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      8A14   
......CCCTGAGACCCTTTcACCTGT..........................................         read_213624_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      14C6   
......CCCTGAGACCCTTTAcCCTGT..........................................          read_42024_0_0_0_1_0_0    MATURE-5P            1         0.21            0         0.00            1         0.64                      15C5   
......CCCTGAGACCCTTTAACCTGTGAt.......................................         read_122806_0_0_0_1_0_0    MATURE-5P            1         0.21            0         0.00            1         0.64            t           23   
......CCCTGAGACCCTTTAACaTGTG.........................................         read_271888_0_0_0_1_0_0    MATURE-5P            1         0.21            0         0.00            1         0.64                      17A4   
......CCCTGAGACCCTTTAACCTGcgt........................................         read_196687_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00          cgt           20   
......CCCTGAGACCCTTTAACCTta..........................................         read_112960_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00           ta           19   
......CCCTtAGACCCTTTAACCTGT..........................................         read_146755_1_0_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      4T16   
........CTGAGACCCTTTAACCTGT..........................................         read_198003_0_0_0_0_1_0    MATURE-5P            1         0.21            0         0.00            1         0.64                        19   
.........TGAGACCCTTTAACCTGTG.........................................         read_249885_0_0_0_1_0_0    MATURE-5P            1         0.21            0         0.00            1         0.64                        19   
......CCCTGAtACCCTTTAACCTGT..........................................         read_272549_0_0_1_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                      6T14   
.......CCTGAGACCCTTTAACCTGT..........................................         read_115806_0_1_0_0_0_0    MATURE-5P            1         0.21            1         0.32            0         0.00                        20   
                                                                                                                     ----------                ----------                ----------   
                                                                                                                            468                       312                       156                                          
                                                                                                                                                  (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               3               2               5           1.06%
      MATURE-5P             312             156             468          98.94%
                     ----------      ----------      ----------                
                            315             158             473                



[END]
