[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************
ID : mmu-mir-125a
DESCRIPTION : mmu-mir-125a MI0000151 Mus musculus miR-125a stem-loop
CHROMOSOME : 17
SPAN : 17967776 - 17967843
LENGTH : 68
SEQUENCE : CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG
OVERHANG THRESHOLD : 75%
*****************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-125a-3p
ACCID : MI0000151
PARENT : mmu-mir-125a
CHROMOSOME : 17
START : 17967776
STOP : 17967843
OFFSET : 44..65
SEQUENCE : ACAGGTGAGGTTCTTGGGAGCC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-125a-5p
ACCID : MI0000151
PARENT : mmu-mir-125a
CHROMOSOME : 17
START : 17967776
STOP : 17967843
OFFSET : 6..29
SEQUENCE : TCCCTGAGACCCTTTAACCTGTGA
STRAND : +
******************************
*** MATURE-3P ***
____________________________________________________________________
CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG REF 17 17967776 - 17967843
ACAGGTGAGGTTCTTGGGAGCC MATURE-3P 17 17967820 - 17967908 mmu-miR-125a-3p +
TCCCTGAGACCCTTTAACCTGTGA MATURE-5P 17 17967782 - 17967872 mmu-miR-125a-5p +
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................CAGGTGAGGTTCTTGGGAGC..... read_350164_1_1_0_1_0_0 MATURE-3P 3 60.00 2 66.67 1 50.00 20
............................................CAGGTGAGGTTCTTGGGAGCCTtt. read_108313_0_1_0_0_0_0 MATURE-3P 1 20.00 1 33.33 0 0.00 tt 22
............................................CAGGTGAGGTTCTTGGGAGCC.... read_405085_0_0_0_0_0_1 MATURE-3P 1 20.00 0 0.00 1 50.00 21
---------- ---------- ----------
5 3 2
(60.00) (40.00)
*** MATURE-5P ***
____________________________________________________________________
CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG REF 17 17967776 - 17967843
ACAGGTGAGGTTCTTGGGAGCC MATURE-3P 17 17967820 - 17967908 mmu-miR-125a-3p +
TCCCTGAGACCCTTTAACCTGTGA MATURE-5P 17 17967782 - 17967872 mmu-miR-125a-5p +
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......CCCTGAGACCCTTTAACCTGT.......................................... read_298028_71_64_39_26_27_44 MATURE-5P 271 57.91 174 55.77 97 62.18 21
......CCCTGAGACCCTTTAACCTGTGA........................................ read_126324_22_10_14_4_1_9 MATURE-5P 60 12.82 46 14.74 14 8.97 23
......CCCTGAGACCCTTTAACCTGTGt........................................ read_112307_9_8_3_4_2_4 MATURE-5P 30 6.41 20 6.41 10 6.41 t 22
......CCCTGAGACCCTTTAACCTGTG......................................... read_87439_9_6_6_5_0_3 MATURE-5P 29 6.20 21 6.73 8 5.13 22
......CCCTGAGACCCTTTAACCTG........................................... read_165066_1_5_3_1_1_1 MATURE-5P 12 2.56 9 2.88 3 1.92 20
......CCCTGAGACCCTTTAACC............................................. read_134320_0_1_0_2_3_1 MATURE-5P 7 1.50 1 0.32 6 3.85 18
......CCCTGAGACCCTTTAAC.............................................. read_193425_0_3_1_0_2_1 MATURE-5P 7 1.50 4 1.28 3 1.92 17
......CCCTGAGACCCTTTAACCTGTt......................................... read_115545_1_1_2_0_0_0 MATURE-5P 4 0.85 4 1.28 0 0.00 t 21
......CCCTGAGACCCTTTAACCTtt.......................................... read_269673_1_0_0_0_1_1 MATURE-5P 3 0.64 1 0.32 2 1.28 tt 19
......CCCTGAGACCCTTTgACCTGT.......................................... read_271022_3_0_0_0_0_0 MATURE-5P 3 0.64 3 0.96 0 0.00 14G6
......CCCTGAGACCCTTTAACaTGT.......................................... read_66219_0_1_0_0_1_0 MATURE-5P 2 0.43 1 0.32 1 0.64 17A3
......aCCTGAGACCCTTTAACCTGT.......................................... read_173915_0_1_0_1_0_0 MATURE-5P 2 0.43 1 0.32 1 0.64 20
.........TGAGACCCTTTAACCTGTGA........................................ read_262992_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 20
......CCCTGAGACCCTTTAACCcGTGA........................................ read_259258_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 18C4
......CCCTGAcACCCTTTAACCTGT.......................................... read_233520_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 6C14
......CCCTGAGACCCTTTAACCTGg.......................................... read_182183_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 g 20
......CCCTGAGACCCTTTAACCTGa.......................................... read_174744_0_0_0_0_1_0 MATURE-5P 1 0.21 0 0.00 1 0.64 a 20
......CCCTGAGACCCTTTAACCTGTc......................................... read_77977_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 c 21
......CCCTGAGACCCTTTtACCTGTtt........................................ read_208265_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 tt 14T6
......CCCTGAGACCCTTTAACCgGTG......................................... read_384914_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 18G3
.........TGAGACCCTTTAACCTGTt......................................... read_203428_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 t 18
......CCCTGAGACCCTTTAACCT............................................ read_411063_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 19
......CCCTGAGACCCTTTAACtTGTG......................................... read_377624_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 17T4
......CCCTGAGACCCcTTAACCTGT.......................................... read_206934_0_0_0_0_0_1 MATURE-5P 1 0.21 0 0.00 1 0.64 11C9
......CCCTGAGACCCTTTgACCTGTG......................................... read_228187_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 14G7
......CCCTGAGACCCTTTAAtCTGT.......................................... read_199916_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 16T4
......CCCTGAGACCCTTTAgCCTGT.......................................... read_225402_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 15G5
..........GAGACCCTTTAACCTGT.......................................... read_84610_0_0_0_0_0_1 MATURE-5P 1 0.21 0 0.00 1 0.64 17
......CCCTGAGACCCTTTAACCTat.......................................... read_22937_0_0_0_1_0_0 MATURE-5P 1 0.21 0 0.00 1 0.64 at 19
......CCCTGAGACCCTTTgACCTGTGA........................................ read_344726_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 14G8
......CCCTGAGACCCTcTAACCTGTGt........................................ read_144516_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 t 12C9
......CCCTGAGACCCTTTAgCCTGTGt........................................ read_27036_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 t 15G6
......tCCTGAGACCCTTTAACCTG........................................... read_186716_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 19
......CCCTGtGACCCTTTAACCTGTGt........................................ read_152254_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 t 5T16
......CCCTGAGACCCTTTAACCTGc.......................................... read_211721_0_0_0_0_1_0 MATURE-5P 1 0.21 0 0.00 1 0.64 c 20
......CCCTGAGACCCTTTAACCTGTa......................................... read_55614_0_0_0_0_0_1 MATURE-5P 1 0.21 0 0.00 1 0.64 a 21
.....TCCCTGAGACCCTTTAACCTGT.......................................... read_272433_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 22
......CCCTGAGcCCCTTTAACCTGTGt........................................ read_11744_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 t 7C14
......CCCTGAGAaCCTTTAACCTGTGA........................................ read_368444_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 8A14
......CCCTGAGACCCTTTcACCTGT.......................................... read_213624_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 14C6
......CCCTGAGACCCTTTAcCCTGT.......................................... read_42024_0_0_0_1_0_0 MATURE-5P 1 0.21 0 0.00 1 0.64 15C5
......CCCTGAGACCCTTTAACCTGTGAt....................................... read_122806_0_0_0_1_0_0 MATURE-5P 1 0.21 0 0.00 1 0.64 t 23
......CCCTGAGACCCTTTAACaTGTG......................................... read_271888_0_0_0_1_0_0 MATURE-5P 1 0.21 0 0.00 1 0.64 17A4
......CCCTGAGACCCTTTAACCTGcgt........................................ read_196687_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 cgt 20
......CCCTGAGACCCTTTAACCTta.......................................... read_112960_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 ta 19
......CCCTtAGACCCTTTAACCTGT.......................................... read_146755_1_0_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 4T16
........CTGAGACCCTTTAACCTGT.......................................... read_198003_0_0_0_0_1_0 MATURE-5P 1 0.21 0 0.00 1 0.64 19
.........TGAGACCCTTTAACCTGTG......................................... read_249885_0_0_0_1_0_0 MATURE-5P 1 0.21 0 0.00 1 0.64 19
......CCCTGAtACCCTTTAACCTGT.......................................... read_272549_0_0_1_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 6T14
.......CCTGAGACCCTTTAACCTGT.......................................... read_115806_0_1_0_0_0_0 MATURE-5P 1 0.21 1 0.32 0 0.00 20
---------- ---------- ----------
468 312 156
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 3 2 5 1.06%
MATURE-5P 312 156 468 98.94%
---------- ---------- ----------
315 158 473
[END]