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REFERENCE HAIRPIN
**********************************************************************************************************************************************
ID                 : mmu-mir-1198
DESCRIPTION        : mmu-mir-1198 MI0006306 Mus musculus miR-1198 stem-loop
CHROMOSOME         : X
SPAN               : 7384227 - 7384347
LENGTH             : 121
SEQUENCE           : TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1198
ACCID      : MI0006306
PARENT     : mmu-mir-1198
CHROMOSOME : X
START      : 7384227
STOP       : 7384347
OFFSET     : 42..63
SEQUENCE   : TATGTGTTCCTGGCTGGCTTGG
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF                  X                    7384227 - 7384347    
                                         TATGTGTTCCTGGCTGGCTTGG                                                           MATURE               X                    7384269 - 7384410    mmu-miR-1198         +                    
_________________________________________________________________________________________________________________________

                                                                                                                     -SEQ-                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................ATGTGTTCCTGGCTGGCTTGG...........................................................   read_119334_19_21_11_3_9_14       MATURE           77        46.95           51        45.95           26        49.06                        21   
..........................................ATGTGTTCCTGGCTGGCTTGGT..........................................................        read_33231_6_6_4_2_0_2       MATURE           20        12.20           16        14.41            4         7.55                        22   
..........................................ATGTGTTCCTGGCTGGCTTGa...........................................................         read_1383_3_2_1_1_2_3       MATURE           12         7.32            6         5.41            6        11.32            a           20   
..........................................ATGTGTTCCTGGCTGGCTTG............................................................       read_270122_7_2_0_0_1_0       MATURE           10         6.10            9         8.11            1         1.89                        20   
..........................................ATGTGTTCCTGGCTGGCTTGt...........................................................       read_397303_2_1_3_0_1_0       MATURE            7         4.27            6         5.41            1         1.89            t           20   
..........................................ATGTGTTCCTGGCTGGCTTGaat.........................................................       read_299077_0_2_1_0_0_2       MATURE            5         3.05            3         2.70            2         3.77          aat           20   
..........................................ATGTGTTCCTGGCTGGCTT.............................................................        read_31628_0_0_0_0_1_3       MATURE            4         2.44            0         0.00            4         7.55                        19   
..........................................ATGTGTTCCTGGCTGGCTTGaa..........................................................       read_348518_1_0_1_1_0_0       MATURE            3         1.83            2         1.80            1         1.89           aa           20   
..........................................ATGTGTTCCTGGCTGGCTTGaaa.........................................................        read_65318_0_3_0_0_0_0       MATURE            3         1.83            3         2.70            0         0.00          aaa           20   
..........................................ATGTGTTCCTGGCTGGCTTGat..........................................................       read_309411_1_0_0_0_1_1       MATURE            3         1.83            1         0.90            2         3.77           at           20   
..........................................ATGTGTTCCTGGCTGGCT..............................................................       read_260061_0_0_0_0_1_1       MATURE            2         1.22            0         0.00            2         3.77                        18   
..........................................ATGTGTTCCTGGCTGGCTTGtaa.........................................................       read_222241_1_0_0_0_1_0       MATURE            2         1.22            1         0.90            1         1.89          taa           20   
..........................................ATGTGTTCCTGGCTGGC...............................................................       read_110380_0_0_1_0_0_1       MATURE            2         1.22            1         0.90            1         1.89                        17   
..........................................ATGTGTTCCTGGCTaGCTTGG...........................................................        read_99654_2_0_0_0_0_0       MATURE            2         1.22            2         1.80            0         0.00                      14A6   
..........................................ATGTGTTCCTGGCTGGtTTGG...........................................................       read_185086_0_0_1_0_0_0       MATURE            1         0.61            1         0.90            0         0.00                      16T4   
..........................................ATGTGTTCCTGGCTtGCTTGG...........................................................       read_180476_1_0_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00                      14T6   
..........................................ATGTGTTCCTGGCTGGaTTGG...........................................................       read_103335_0_1_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00                      16A4   
..........................................ATGTGTTCCTGGCTGGCTTGGg..........................................................       read_281785_0_0_0_0_0_1       MATURE            1         0.61            0         0.00            1         1.89            g           21   
..........................................ATGTGTTCCTGGCTGGCTTGtg..........................................................       read_283305_1_0_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00           tg           20   
..........................................ATGTGTTCCTGGCTGGCTaat...........................................................       read_170811_0_1_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00          aat           18   
..........................................ATGTGTTCCTGGCTGGCTTGGTAa........................................................        read_17935_0_1_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00            a           23   
..........................................ATGTGTTCCTGGCTGGCTTGtat.........................................................       read_314154_1_0_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00          tat           20   
..........................................ATGTGTTCCTGGCTGGCTTGag..........................................................       read_390886_0_0_1_0_0_0       MATURE            1         0.61            1         0.90            0         0.00           ag           20   
..........................................ATGTGTTCCTGGCTGGCTTGtt..........................................................       read_377735_0_1_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00           tt           20   
..........................................ATGTGTTCCTGGCTGGCTTGGTAt........................................................       read_175814_0_1_0_0_0_0       MATURE            1         0.61            1         0.90            0         0.00            t           23   
..........................................ATGTGTTCCTGGCTGGCTTGta..........................................................       read_294279_0_0_0_0_0_1       MATURE            1         0.61            0         0.00            1         1.89           ta           20   
                                                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                                               164                       111                        53                                          
                                                                                                                                                                                                     (67.68)                   (32.32)                                       




*** OTHER ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF                  X                    7384227 - 7384347    
                                         TATGTGTTCCTGGCTGGCTTGG                                                           MATURE               X                    7384269 - 7384410    mmu-miR-1198         +                    
_________________________________________________________________________________________________________________________

                                                                                                                     -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................................................AGCTAGCCTCTAACTCATGGC.....................   read_139301_0_1_0_0_0_1        OTHER            2        66.67            1        50.00            1       100.00                        21   
................................................................................AGCTAGCCTCTAACTCATGG......................   read_181480_0_0_1_0_0_0        OTHER            1        33.33            1        50.00            0         0.00                        20   
                                                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                                                             3                         2                         1                                          
                                                                                                                                                                                                 (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             111              53             164          98.20%
          OTHER               2               1               3           1.80%
                     ----------      ----------      ----------                
                            113              54             167                



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