[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************************
ID : mmu-mir-1198
DESCRIPTION : mmu-mir-1198 MI0006306 Mus musculus miR-1198 stem-loop
CHROMOSOME : X
SPAN : 7384227 - 7384347
LENGTH : 121
SEQUENCE : TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1198
ACCID : MI0006306
PARENT : mmu-mir-1198
CHROMOSOME : X
START : 7384227
STOP : 7384347
OFFSET : 42..63
SEQUENCE : TATGTGTTCCTGGCTGGCTTGG
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF X 7384227 - 7384347
TATGTGTTCCTGGCTGGCTTGG MATURE X 7384269 - 7384410 mmu-miR-1198 +
_________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................ATGTGTTCCTGGCTGGCTTGG........................................................... read_119334_19_21_11_3_9_14 MATURE 77 46.95 51 45.95 26 49.06 21
..........................................ATGTGTTCCTGGCTGGCTTGGT.......................................................... read_33231_6_6_4_2_0_2 MATURE 20 12.20 16 14.41 4 7.55 22
..........................................ATGTGTTCCTGGCTGGCTTGa........................................................... read_1383_3_2_1_1_2_3 MATURE 12 7.32 6 5.41 6 11.32 a 20
..........................................ATGTGTTCCTGGCTGGCTTG............................................................ read_270122_7_2_0_0_1_0 MATURE 10 6.10 9 8.11 1 1.89 20
..........................................ATGTGTTCCTGGCTGGCTTGt........................................................... read_397303_2_1_3_0_1_0 MATURE 7 4.27 6 5.41 1 1.89 t 20
..........................................ATGTGTTCCTGGCTGGCTTGaat......................................................... read_299077_0_2_1_0_0_2 MATURE 5 3.05 3 2.70 2 3.77 aat 20
..........................................ATGTGTTCCTGGCTGGCTT............................................................. read_31628_0_0_0_0_1_3 MATURE 4 2.44 0 0.00 4 7.55 19
..........................................ATGTGTTCCTGGCTGGCTTGaa.......................................................... read_348518_1_0_1_1_0_0 MATURE 3 1.83 2 1.80 1 1.89 aa 20
..........................................ATGTGTTCCTGGCTGGCTTGaaa......................................................... read_65318_0_3_0_0_0_0 MATURE 3 1.83 3 2.70 0 0.00 aaa 20
..........................................ATGTGTTCCTGGCTGGCTTGat.......................................................... read_309411_1_0_0_0_1_1 MATURE 3 1.83 1 0.90 2 3.77 at 20
..........................................ATGTGTTCCTGGCTGGCT.............................................................. read_260061_0_0_0_0_1_1 MATURE 2 1.22 0 0.00 2 3.77 18
..........................................ATGTGTTCCTGGCTGGCTTGtaa......................................................... read_222241_1_0_0_0_1_0 MATURE 2 1.22 1 0.90 1 1.89 taa 20
..........................................ATGTGTTCCTGGCTGGC............................................................... read_110380_0_0_1_0_0_1 MATURE 2 1.22 1 0.90 1 1.89 17
..........................................ATGTGTTCCTGGCTaGCTTGG........................................................... read_99654_2_0_0_0_0_0 MATURE 2 1.22 2 1.80 0 0.00 14A6
..........................................ATGTGTTCCTGGCTGGtTTGG........................................................... read_185086_0_0_1_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 16T4
..........................................ATGTGTTCCTGGCTtGCTTGG........................................................... read_180476_1_0_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 14T6
..........................................ATGTGTTCCTGGCTGGaTTGG........................................................... read_103335_0_1_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 16A4
..........................................ATGTGTTCCTGGCTGGCTTGGg.......................................................... read_281785_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.89 g 21
..........................................ATGTGTTCCTGGCTGGCTTGtg.......................................................... read_283305_1_0_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 tg 20
..........................................ATGTGTTCCTGGCTGGCTaat........................................................... read_170811_0_1_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 aat 18
..........................................ATGTGTTCCTGGCTGGCTTGGTAa........................................................ read_17935_0_1_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 a 23
..........................................ATGTGTTCCTGGCTGGCTTGtat......................................................... read_314154_1_0_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 tat 20
..........................................ATGTGTTCCTGGCTGGCTTGag.......................................................... read_390886_0_0_1_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 ag 20
..........................................ATGTGTTCCTGGCTGGCTTGtt.......................................................... read_377735_0_1_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 tt 20
..........................................ATGTGTTCCTGGCTGGCTTGGTAt........................................................ read_175814_0_1_0_0_0_0 MATURE 1 0.61 1 0.90 0 0.00 t 23
..........................................ATGTGTTCCTGGCTGGCTTGta.......................................................... read_294279_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.89 ta 20
---------- ---------- ----------
164 111 53
(67.68) (32.32)
*** OTHER ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF X 7384227 - 7384347
TATGTGTTCCTGGCTGGCTTGG MATURE X 7384269 - 7384410 mmu-miR-1198 +
_________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................................................AGCTAGCCTCTAACTCATGGC..................... read_139301_0_1_0_0_0_1 OTHER 2 66.67 1 50.00 1 100.00 21
................................................................................AGCTAGCCTCTAACTCATGG...................... read_181480_0_0_1_0_0_0 OTHER 1 33.33 1 50.00 0 0.00 20
---------- ---------- ----------
3 2 1
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 111 53 164 98.20%
OTHER 2 1 3 1.80%
---------- ---------- ----------
113 54 167
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