[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-101a
DESCRIPTION        : mmu-mir-101a MI0000148 Mus musculus miR-101a stem-loop
CHROMOSOME         : 4
SPAN               : 101019550 - 101019632
LENGTH             : 83
SEQUENCE           : AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA
OVERHANG THRESHOLD : 75%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-101a
ACCID      : MI0000148
PARENT     : mmu-mir-101a
CHROMOSOME : 4
START      : 101019550
STOP       : 101019632
OFFSET     : 51..71
SEQUENCE   : TACAGTACTGTGATAACTGAA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-101a*
ACCID      : MI0000148
PARENT     : mmu-mir-101a
CHROMOSOME : 4
START      : 101019550
STOP       : 101019632
OFFSET     : 14..35
SEQUENCE   : TCAGTTATCACAGTGCTGATGC
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________
AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA REF                  4                    101019550 - 101019632 
                                                  TACAGTACTGTGATAACTGAA             MATURE               4                    101019601 - 101019703 mmu-miR-101a         -                    
             TCAGTTATCACAGTGCTGATGC                                                 MATURESTAR           4                    101019564 - 101019667 mmu-miR-101a*        -                    
___________________________________________________________________________________

                                                                               -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ACAGTACTGTGATAACTGAAG............   read_401449_69_80_50_19_32_37       MATURE          287        33.61          199        37.06           88        27.76                        21   
...................................................ACAGTACTGTGATAACTGAAt............   read_411508_29_51_27_11_27_28       MATURE          173        20.26          107        19.93           66        20.82            t           20   
...................................................ACAGTACTGTGATAACTGA..............    read_245219_22_19_12_22_8_13       MATURE           96        11.24           53         9.87           43        13.56                        19   
...................................................ACAGTACTGTGATAACTGAAGt...........      read_118196_15_19_12_3_3_4       MATURE           56         6.56           46         8.57           10         3.15            t           21   
...................................................ACAGTACTGTGATAACTGAAa............        read_385734_9_6_13_6_3_9       MATURE           46         5.39           28         5.21           18         5.68            a           20   
...................................................ACAGTACTGTGATAACTGAA.............        read_160501_7_12_7_6_3_9       MATURE           44         5.15           26         4.84           18         5.68                        20   
...................................................ACAGTACTGTGATAACTGAAGa...........         read_103684_9_8_7_3_1_5       MATURE           33         3.86           24         4.47            9         2.84            a           21   
...................................................ACAGTACTGTGATAACT................          read_85197_1_2_0_9_5_9       MATURE           26         3.04            3         0.56           23         7.26                        17   
...................................................ACAGTACTGTGATAACTG...............         read_255363_2_1_3_1_1_6       MATURE           14         1.64            6         1.12            8         2.52                        18   
...................................................ACAGTACTGTGATAACTGAAtt...........           read_8479_1_4_1_0_1_3       MATURE           10         1.17            6         1.12            4         1.26           tt           20   
.....................................................AGTACTGTGATAACTGA..............          read_96784_0_0_0_3_3_1       MATURE            7         0.82            0         0.00            7         2.21                        17   
...................................................ACAGTACTGTGATAACTGAg.............          read_49105_2_0_0_1_1_1       MATURE            5         0.59            2         0.37            3         0.95            g           19   
...................................................ACAGTACTGTGATAACTGAAaa...........         read_119631_0_0_1_1_1_0       MATURE            3         0.35            1         0.19            2         0.63           aa           20   
...................................................ACAGTACTGTGATAACTGt..............         read_299752_1_1_0_1_0_0       MATURE            3         0.35            2         0.37            1         0.32            t           18   
...................................................ACAGTACTGTGATAACTGAAGtaa.........          read_74372_2_0_1_0_0_0       MATURE            3         0.35            3         0.56            0         0.00          taa           21   
......................................................GTACTGTGATAACTGAAG............         read_275085_1_0_1_0_0_0       MATURE            2         0.23            2         0.37            0         0.00                        18   
...................................................cCAGTACTGTGATAACTGAAt............          read_18192_0_1_0_1_0_0       MATURE            2         0.23            1         0.19            1         0.32            t           19   
...................................................ACAGTACTGTGATAACTGAAc............         read_239752_0_2_0_0_0_0       MATURE            2         0.23            2         0.37            0         0.00            c           20   
...................................................ACAGTACTGTGATAcCTGAAGt...........         read_383674_2_0_0_0_0_0       MATURE            2         0.23            2         0.37            0         0.00            t         14C6   
......................................................GTACTGTGATAACTGAA.............          read_71680_0_0_0_1_0_1       MATURE            2         0.23            0         0.00            2         0.63                        17   
...................................................ACAGTACTGTGATAACTGAgg............          read_42136_1_1_0_0_0_0       MATURE            2         0.23            2         0.37            0         0.00           gg           19   
...................................................ACAGTACTGTGATcACTGAA.............         read_324168_0_0_1_0_0_1       MATURE            2         0.23            1         0.19            1         0.32                      13C6   
.....................................................AGTACTGTGATAACTGAAt............         read_261939_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.32            t           18   
...................................................ACAGTACTGTGATAACTGtAG............          read_24729_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      18T2   
...................................................gCAGTACTGTGATAACTGAAt............         read_165274_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.32            t           19   
..................................................TACAGTACTGTGATAACTGAtg............          read_38809_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.32           tg           20   
...................................................ACAGTACTGgGATAACTGAAGa...........         read_226580_0_0_1_0_0_0       MATURE            1         0.12            1         0.19            0         0.00            a         9G11   
...................................................ACAGcACTGTGATAACTGAA.............         read_362467_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      4C15   
...................................................ACAGTACTGTGATAACTtAAGt...........         read_220821_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00            t         17T3   
...................................................ACAGTACTGTGATAACTGAAGtt..........          read_53828_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00           tt           21   
....................................................CAGTACTGTGATAACTGAA.............           read_6367_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                        19   
...................................................ACAGTACcGTGATAACTGAAG............         read_370002_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      7C13   
...................................................ACAGTACTGTGATAcCTGAA.............         read_336644_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      14C5   
.....................................................AGTACTGTGATAACTGAAG............         read_223929_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.32                        19   
...................................................ACAGTACTGTGATAcCTGAAG............         read_242507_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      14C6   
...................................................ACAGTACTGTGATAACTGAAag...........         read_217209_0_0_1_0_0_0       MATURE            1         0.12            1         0.19            0         0.00           ag           20   
...................................................ACAGTACTGTGATAACTGcAG............         read_194252_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      18C2   
...................................................ACAGTACTGTGATAACTGAga............         read_279272_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00           ga           19   
...................................................cCAGTACTGTGATAACTGA..............         read_399818_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                        18   
...................................................ACAGTACTGTGATAACTGAgt............         read_281645_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00           gt           19   
...................................................ACAGTACTGTGATAACcGAAGa...........         read_192664_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00            a         16C4   
...................................................ACAGcACTGTGATAACTGAAG............         read_403434_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                      4C16   
...................................................ACAGTACTGTGtTAACTGAAG............         read_139612_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.32                      11T9   
.....................................................AGTACTGTGATAACTGAA.............         read_233495_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.32                        18   
...................................................ACAGgACTGTGATAACTGAAGa...........         read_116171_0_0_1_0_0_0       MATURE            1         0.12            1         0.19            0         0.00            a         4G16   
...................................................ACAGTACTGTGATAACTGAAGaa..........         read_329900_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00           aa           21   
.......................................................TACTGTGATAACTGAAG............         read_394714_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.32                        17   
...................................................ACAGTACTGTGATAACTtAAG............         read_233649_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.32                      17T3   
...................................................ACAGTACTGTGATAACTtAA.............         read_377722_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.32                      17T2   
...................................................gCAGTACTGTGATAACTGAAG............         read_116616_0_0_1_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                        20   
...................................................cCAGTACTGTGATAACTGAA.............         read_365173_0_1_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00                        19   
...................................................ACAGTACTGTGgTAACTGAAG............          read_62590_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.32                      11G9   
...................................................ACAGTAaTGTGATAACTGAAG............          read_13022_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.32                      6A14   
...................................................ACAGTACTGTGATAAtTGAAG............         read_204271_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.32                      15T5   
...................................................gCAGTACTGTGATAACTGAAGa...........         read_163408_1_0_0_0_0_0       MATURE            1         0.12            1         0.19            0         0.00            a           20   
...................................................ACAGTACTaTGATAACTGAAG............         read_112382_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.32                      8A12   
                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                           854                       537                       317                                          
                                                                                                                                                                 (62.88)                   (37.12)                                       




*** MATURESTAR ***
___________________________________________________________________________________
AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA REF                  4                    101019550 - 101019632 
                                                  TACAGTACTGTGATAACTGAA             MATURE               4                    101019601 - 101019703 mmu-miR-101a         -                    
             TCAGTTATCACAGTGCTGATGC                                                 MATURESTAR           4                    101019564 - 101019667 mmu-miR-101a*        -                    
___________________________________________________________________________________

                                                                               -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............CAGTTATCACAGTGCTGATGCT................................................   read_110470_2_7_2_0_0_3   MATURESTAR           14        24.56           11        26.83            3        18.75                        22   
...............AGTTATCACAGTGCTGATGt.................................................    read_24536_2_1_3_0_2_1   MATURESTAR            9        15.79            6        14.63            3        18.75            t           19   
...............AGTTATCACAGTGCTGATGCT................................................    read_76746_2_2_1_0_1_0   MATURESTAR            6        10.53            5        12.20            1         6.25                        21   
...............AGTTATCACAGTGCTGATG..................................................   read_302255_2_2_1_0_0_1   MATURESTAR            6        10.53            5        12.20            1         6.25                        19   
..............CAGTTATCACAGTGCTGATG..................................................   read_176620_1_1_2_0_0_1   MATURESTAR            5         8.77            4         9.76            1         6.25                        20   
...............AGTTATCACAGTGCTGATGC.................................................   read_160255_0_1_0_1_3_0   MATURESTAR            5         8.77            1         2.44            4        25.00                        20   
..............CAGTTATCACAGTGCTGATGt.................................................   read_359494_0_2_2_0_0_0   MATURESTAR            4         7.02            4         9.76            0         0.00            t           20   
...............AGTTATCACAGTGCTGATtt.................................................   read_401607_0_0_0_0_0_1   MATURESTAR            1         1.75            0         0.00            1         6.25           tt           18   
..............CAGTTATCACAGTGCTGATGaa................................................   read_336501_0_1_0_0_0_0   MATURESTAR            1         1.75            1         2.44            0         0.00           aa           20   
..............CAGTTATCACAGTGCTGATGC.................................................   read_258904_0_1_0_0_0_0   MATURESTAR            1         1.75            1         2.44            0         0.00                        21   
...............AGTTATCACAGTGCTGA....................................................   read_164795_0_0_0_0_0_1   MATURESTAR            1         1.75            0         0.00            1         6.25                        17   
...............AGTTATCACAGTGCTGAT...................................................   read_166031_0_0_0_1_0_0   MATURESTAR            1         1.75            0         0.00            1         6.25                        18   
..............CAGTTATCACAGTGaTGATGCT................................................   read_110852_1_0_0_0_0_0   MATURESTAR            1         1.75            1         2.44            0         0.00                      14A7   
...............AGTTATCACAGTGCTGATGttt...............................................   read_294562_0_1_0_0_0_0   MATURESTAR            1         1.75            1         2.44            0         0.00          ttt           19   
...............AGTTATCACAGTGCTGATt..................................................   read_146663_0_0_1_0_0_0   MATURESTAR            1         1.75            1         2.44            0         0.00            t           18   
                                                                                                                              ----------                ----------                ----------   
                                                                                                                                      57                        41                        16                                          
                                                                                                                                                           (71.93)                   (28.07)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             537             317             854          93.74%
     MATURESTAR              41              16              57           6.26%
                     ----------      ----------      ----------                
                            578             333             911                



[END]
