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REFERENCE HAIRPIN
**************************************************************************************************
ID                 : mmu-mir-1-1
DESCRIPTION        : mmu-mir-1-1 MI0000139 Mus musculus miR-1-1 stem-loop
CHROMOSOME         : 2
SPAN               : 180123753 - 180123829
LENGTH             : 77
SEQUENCE           : GCTTGGGACACATACTTCTTTATATGCCCATATGAACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGC
OVERHANG THRESHOLD : 75%
**************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1
ACCID      : MI0000139
PARENT     : mmu-mir-1-1
CHROMOSOME : 2
START      : 180123753
STOP       : 180123829
OFFSET     : 49..70
SEQUENCE   : TGGAATGTAAAGAAGTATGTAT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________
GCTTGGGACACATACTTCTTTATATGCCCATATGAACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGC REF                  2                    180123753 - 180123829 
                                                TGGAATGTAAAGAAGTATGTAT        MATURE               2                    180123802 - 180123899 mmu-miR-1            +                    
_____________________________________________________________________________

                                                                         -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................GGAATGTAAAGAAGTATGTAT........   read_377021_2_1_0_0_3_0       MATURE            6        37.50            3        30.00            3        50.00                        21   
.................................................GGAATGTAAAGAAGTATGgag........    read_31528_0_2_1_1_0_0       MATURE            4        25.00            3        30.00            1        16.67          gag           18   
.................................................GGAATGTAAAGAAGTATGTAc........    read_97595_0_0_0_1_0_1       MATURE            2        12.50            0         0.00            2        33.33            c           20   
.................................................GGAATGTAAAGAAGTATGga.........   read_108128_0_0_1_0_0_0       MATURE            1         6.25            1        10.00            0         0.00           ga           18   
.................................................GGAATGTAAAGAAGTATGTAg........    read_78638_0_1_0_0_0_0       MATURE            1         6.25            1        10.00            0         0.00            g           20   
.................................................GGAATGTAAAGAAGTATGT..........     read_9742_0_1_0_0_0_0       MATURE            1         6.25            1        10.00            0         0.00                        19   
...................................................AATGTAAAGAAGTATGTAcct......    read_53476_1_0_0_0_0_0       MATURE            1         6.25            1        10.00            0         0.00          cct           18   
                                                                                                                        ----------                ----------                ----------   
                                                                                                                                16                        10                         6                                          
                                                                                                                                                     (62.50)                   (37.50)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              10               6              16         100.00%
                     ----------      ----------      ----------                
                             10               6              16                



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